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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cucsa.127390.1 |
| Common Name | Csa_6G502620, LOC101218550 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family |
GRAS |
| Protein Properties |
Length: 610aa MW: 66641.9 Da PI: 4.5835 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.127390.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 362.9 | 4.5e-111 | 241 | 609 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96
++L+ecA+ +s+++ +a ++L +l+e +s++gdp++R+a+yf+ AL +rl+ ++ ++ +++++t s++ + ++k++++++P+ kf+hl
Cucsa.127390.1 241 LKTLIECAR-ISESEPDRAAQTLIKLKESSSEHGDPTERVAFYFMDALCRRLSL--PSDSRLISCEST----SDDFTLSYKALNDACPYSKFAHL 328
689*****9.77788999999999****************************98..666666677766....58999****************** PP
GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
taNqaIle++e+++++HiiDf+i qG+QW+aLlqaLa+R+ g+p +Ri g+ +p g ++ l +tg+rLa+fA+ l+++fef++ + + +e+
Cucsa.127390.1 329 TANQAILESTENASKIHIIDFGIAQGVQWAALLQALATRSTGKPtGIRISGIPAPMLGscPATGLFATGNRLAEFAKLLELNFEFDP-ILTPIEE 422
****************************************776659********9999999**************************.799**** PP
GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
l+ ++++++++E+laVn++lql++llde+ +vL+l ksl+Pk+v++ e ea++n+ Fl+rf +al++ysa+f+sl+ klpr+s+er
Cucsa.127390.1 423 LNESSFQIDTHETLAVNFMLQLYNLLDETPRAVL---NVLQLAKSLNPKIVTLGEYEASLNRVGFLNRFKNALRHYSAVFESLDPKLPRDSNERL 514
**************************99998888...9********************************************************* PP
GRAS 284 kvErellgreivnvvacegae..rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
+E+ llgr+i +v e + ++er+e +e+W++ +e++GF++v+ls++a +qak ll k++ s +y++ e+s ++ l W++ p+++vS+Wr
Cucsa.127390.1 515 HLEKLLLGRQIGGLVGPESSPgsKTERMEDKEEWKKLMENSGFESVNLSHYAKSQAKILLWKYDySSEYSLMESSPGFLsLAWNEVPIITVSSWR 609
****************99986669****************************************9999****99998888**************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 610 aa
Download sequence Send
to blast |
MANMCADSGN LMAIAQQVMK QKQQQEQQQQ HPQHQPQQLT GPCTFGLNPW SASNHALSGA 60
PDLGFGLTGA GFPDPFQVQR VVDGGETSFQ FPNLEHHSPA FRFSDFDGGA AAEFDSDEWM 120
ESLMAGGDST DSSNLPSGCD AWQSNSDFAF YAADPFVPCP SRLPIPCSSP SDLNRVIFPD 180
PPKSEPAVEP PVVSWTGIPP ATPSAVVKDT QIPNPPLAVL KSEDNGGSSS SADTESTPPL 240
LKTLIECARI SESEPDRAAQ TLIKLKESSS EHGDPTERVA FYFMDALCRR LSLPSDSRLI 300
SCESTSDDFT LSYKALNDAC PYSKFAHLTA NQAILESTEN ASKIHIIDFG IAQGVQWAAL 360
LQALATRSTG KPTGIRISGI PAPMLGSCPA TGLFATGNRL AEFAKLLELN FEFDPILTPI 420
EELNESSFQI DTHETLAVNF MLQLYNLLDE TPRAVLNVLQ LAKSLNPKIV TLGEYEASLN 480
RVGFLNRFKN ALRHYSAVFE SLDPKLPRDS NERLHLEKLL LGRQIGGLVG PESSPGSKTE 540
RMEDKEEWKK LMENSGFESV NLSHYAKSQA KILLWKYDYS SEYSLMESSP GFLSLAWNEV 600
PIITVSSWR*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}. |
