PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.126810.1 | ||||||||
Common Name | Csa_1G074970, LOC101211189 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | Dof | ||||||||
Protein Properties | Length: 352aa MW: 38945.5 Da PI: 7.7007 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.7 | 6.1e-39 | 67 | 126 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++ l+cprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+ Cucsa.126810.1 67 QQEPLRCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRL 126 57889*****************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-27 | 69 | 125 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.8E-33 | 69 | 125 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.46 | 71 | 125 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 73 | 109 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MLGNCEKMVL ISSSPNQWPQ MMKNNNHPTS LDHDHQKGLN LIGSSSGIIM DNNKQQDQKT 60 QQKQQHQQEP LRCPRCDSSN TKFCYYNNYS LSQPRHFCKA CKRYWTRGGT LRNVPVGGGC 120 RKNKRLKRPT ISSTTTTVTH SSSSPAPTAP DSTSSSSTSC NTNPLHNIFY GSTSDLNLPF 180 SGYDHHHHNH LQTHLNALGL GFSSPNIDHR DFNLNGFNSS SLLSGYSSLF GNNNNNPSSN 240 STSISSLLAS KFDPNLFGNL ASSQPFDDHV MGSNGGDQLG LNVKDVKLED GMKRLNWEDD 300 GHQQQNHQTD NEIVAQSNDD HHNSLFANNW TSQNWHHDPP NLASSITSSL I* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681932 | 0.0 | LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001. | |||
GenBank | LN713266 | 0.0 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004146609.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.4-like | ||||
TrEMBL | A0A0A0LV58 | 0.0 | A0A0A0LV58_CUCSA; Uncharacterized protein | ||||
STRING | XP_004163442.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4522 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28310.2 | 2e-34 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.126810.1 |
Entrez Gene | 101211189 |
Publications ? help Back to Top | |||
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