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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.126730.1 | ||||||||
Common Name | Csa_1G074400, LOC101210203 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 205aa MW: 23251.2 Da PI: 6.5301 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.8 | 5.1e-10 | 16 | 64 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + +Er+RR++++ f++L +llP+ + + Le A++YIk+Lq Cucsa.126730.1 16 KFVERNRRKEMKALFSTLNSLLPNqT--SMEAPRTVPDQLEDATNYIKELQ 64 568*********************44..577779999*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.93E-11 | 9 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.28 | 10 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.08E-6 | 12 | 65 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.7E-10 | 14 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0014 | 16 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.2E-7 | 17 | 64 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MSNPIRCQPT PQSNRKFVER NRRKEMKALF STLNSLLPNQ TSMEAPRTVP DQLEDATNYI 60 KELQKNIKKL KEKKEKLIGM EEDEEAEGRR RRRGYEDETK PKLSVHVKAH QIGSSVEVFL 120 TTGSDYHFNL QQVLRLLQDN GAEILNVNQS MFTDRVFHKI TAQVDGEGIL GGGDGERICE 180 TVKKYVSEYK DGECSVEGNG GEDF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681932 | 1e-132 | LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001. | |||
GenBank | LN713266 | 1e-132 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004146605.1 | 1e-150 | PREDICTED: transcription factor bHLH118-like | ||||
TrEMBL | A0A0A0LUL3 | 1e-149 | A0A0A0LUL3_CUCSA; Uncharacterized protein | ||||
STRING | XP_004165574.1 | 1e-150 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21409 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 4e-16 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.126730.1 |
Entrez Gene | 101210203 |
Publications ? help Back to Top | |||
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