PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.126450.1
Common NameCsa_1G073060, LOC101218318
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 354aa    MW: 38890.8 Da    PI: 9.3735
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.126450.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1631.1e-50161551128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelvv+yL++k+++++l++  +i+e+d+yk++PwdLp+k+  +++ewyfF++r++ky++g r+nra+ sgyWkatg+dk+++s 
  Cucsa.126450.1  16 LPPGFRFHPTDEELVVHYLTRKLSSSPLPA-PIIAELDLYKFDPWDLPSKAVFGKNEWYFFTPRERKYPNGARPNRAAISGYWKATGTDKPIMSC 109
                     79***************************9.88***************77778999*************************************98 PP

             NAM  96 .........kgel......vglkktLvfykgrapkgektdWvmheyrl 128
                              +  +      vg+kk Lvfy gr pkg+kt+W+mheyrl
  Cucsa.126450.1 110 nynninngsN--NnngiqkVGVKKALVFYGGRPPKGVKTNWIMHEYRL 155
                     7766666550..0555666***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-6010191IPR003441NAC domain
PROSITE profilePS5100557.85616191IPR003441NAC domain
PfamPF023659.0E-2717155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MKSSDSSSNT SAHLQLPPGF RFHPTDEELV VHYLTRKLSS SPLPAPIIAE LDLYKFDPWD  60
LPSKAVFGKN EWYFFTPRER KYPNGARPNR AAISGYWKAT GTDKPIMSCN YNNINNGSNN  120
NNGIQKVGVK KALVFYGGRP PKGVKTNWIM HEYRLLHLPN NNPNLLHPHL TNPTKPSLKL  180
DDWVLCRIYM KNIAQASIID REMEELSRVA ARPPKTVVGG GHKGTGNCYL DVVTLSTEGD  240
DIINNHQNNS NNISELPSSS CSSKRGLTSQ LWSGGATASN DGGKPLRLDL MNSYSGGATT  300
AGTEENTVSY MSLLNQLPVQ NAAFQSGAPL IGSLNDGVLR QHFQLPTNIN WNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-7071926169Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146638.20.0PREDICTED: NAC transcription factor 25-like
TrEMBLA0A0A0LXC30.0A0A0A0LXC3_CUCSA; Uncharacterized protein
STRINGXP_004167596.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2480833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-83NAC domain containing protein 25
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]