PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.125970.1
Common NameCsa_1G070590, LOC105435148
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 359aa    MW: 40151.3 Da    PI: 4.4942
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.125970.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.38.4e-062472841254
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Cucsa.125970.1 247 RKEKLGDKITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 284
                     67788899********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.763235284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.08E-6245289No hitNo description
SuperFamilySSF474591.01E-11245300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-9249301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MADEYPAGSL FLPAVTNTSP CSVGNSTFLI DSTITSASNW NQSFLGWNDE QRVDTTVVVD  60
SMTVTKLNYD DQEITCGSEE QQNPNMFFKS TDDDHHSLFL MEQPYNIQTA TNLYHDVVTT  120
TSQVLPMAFP FEAISIGYTP TLLPCSSLDQ PTQFLANNRT INNCCSLTNP DELLSCHPMF  180
QTQLLHPPPL NFSNGIIPKC PTKLMGCDEV VEDWSRVERE NESKEIAIIK RPRSDNLPSP  240
LPTFKVRKEK LGDKITALQQ LVSPFGKTDT ASVLHEAIEY IKFLHNQIRV LSTPYMEIGD  300
QNQEPKIISE EELKNTNENM KEDLRSRGLC LVTIPSTVAL ANGNILNFWS PTFGGTFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011652899.10.0PREDICTED: uncharacterized protein LOC105435148 isoform X1
TrEMBLA0A0A0LUD20.0A0A0A0LUD2_CUCSA; Uncharacterized protein
STRINGXP_008441703.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2480622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.37e-46bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]