PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.125330.1 | ||||||||
Common Name | Csa_4G361820, LOC101220287 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NAC | ||||||||
Protein Properties | Length: 225aa MW: 25631.8 Da PI: 8.7053 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.7 | 4.5e-53 | 7 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtd+elv++yL++k++++++++ +i+e+d+yk++PwdLp+++ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg dk++ + Cucsa.125330.1 7 LPPGFRFHPTDDELVTHYLCRKCASQPISV-PIIAEIDLYKYNPWDLPERALYGEKEWYFFSPRDRKYPNGSRPNRSAGSGYWKATGADKPIGR- 99 79****************************.88***************8777889*************************************98. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kk Lvfy+g+apkgekt+W+mheyrl Cucsa.125330.1 100 -PKAVGIKKALVFYSGKAPKGEKTNWIMHEYRL 131 .778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-62 | 4 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.791 | 7 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-28 | 8 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MASDLQLPPG FRFHPTDDEL VTHYLCRKCA SQPISVPIIA EIDLYKYNPW DLPERALYGE 60 KEWYFFSPRD RKYPNGSRPN RSAGSGYWKA TGADKPIGRP KAVGIKKALV FYSGKAPKGE 120 KTNWIMHEYR LADVDRSARK KNSLRLDDWV LCRIYNKKGA IEKQNPPEMN TIGFFENEEQ 180 EEKPEILNDR AISGRIPSAS PLQGPPSSGV VNDYVYFDPS DSIPX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-84 | 3 | 163 | 11 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC814686 | 0.0 | KC814686.1 Citrullus colocynthis NAC domain transcription factor 1 (NAC1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004142632.1 | 1e-165 | PREDICTED: NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 1e-111 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A0A0KYJ2 | 1e-164 | A0A0A0KYJ2_CUCSA; Uncharacterized protein | ||||
STRING | XP_004161162.1 | 1e-165 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1258 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-112 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.125330.1 |
Entrez Gene | 101220287 |