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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.124410.1 | ||||||||
Common Name | Csa_6G445210, LOC101217039 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ARF | ||||||||
Protein Properties | Length: 699aa MW: 76609.4 Da PI: 6.7817 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.3 | 1.4e-23 | 120 | 221 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF + + Cucsa.124410.1 120 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RAE 210 89****************************996555555..89***********************************************..448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ Cucsa.124410.1 211 NGDLCVGIRRA 221 8999****997 PP | |||||||
2 | Auxin_resp | 111.9 | 6.2e-37 | 287 | 370 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ as++++Fe++++Prast+eF+vk++ v++al+++++ GmRfkmafetedss++++ +Gt+ +v+ +dp+rWp+S+Wr+L+ Cucsa.124410.1 287 AAKLASNGQPFEIIFYPRASTPEFCVKAALVKAALQIRWCSGMRFKMAFETEDSSRISWfMGTINSVQVSDPLRWPESPWRLLQ 370 7899******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-37 | 113 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-29 | 114 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.00E-21 | 119 | 220 | No hit | No description |
PROSITE profile | PS50863 | 13.112 | 120 | 222 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-21 | 120 | 222 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.8E-22 | 120 | 221 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.4E-31 | 287 | 370 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 19.798 | 612 | 692 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 699 aa Download sequence Send to blast |
MITFMDSKEK LKEVEKCLDP QLWHACAGGM VQMPPVNARV FYFPQGHAEH SCAPVDFRNC 60 PKVPSYTLCR VSAIKFLADP DTDEVFAKLR LIPINGSELD FEDDGIGRLN GSEQDKPTSF 120 AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSADPPVQTI LAKDVHGETW KFRHIYRGTP 180 RRHLLTTGWS TFVNHKKLVA GDSIVFLRAE NGDLCVGIRR AKRGIGDGPE SSCGWNPAGG 240 NCAVSYGAFS AFLREDDNRL TRSANGMNGN GSLMGKGKVK PESVTEAAKL ASNGQPFEII 300 FYPRASTPEF CVKAALVKAA LQIRWCSGMR FKMAFETEDS SRISWFMGTI NSVQVSDPLR 360 WPESPWRLLQ VTWDEPDLLQ NVKRVSPWLV ELVSSMSPIH LAPFSPPRKK FRYPQHPDFP 420 LDNQPPVPSF SSYLHGTGSP FGCPPDNNPA GMQGARHAHF GLSLSDFHVS KLQSGLFSIG 480 YRSLDPAAGS TRLSGNVMTE KPSMSENVSC LLTMAHSTQA SKKFDGVKTP QLILFGRPIL 540 TELQMSQSFS GDTVSPVGTG NSSSDGNGDK MTNLSDGSGS ALHQQGLPEG SAGENFQWYK 600 DNCQEIDPNL DIGHCKVFME SEDVGRTLDL SSLGSYEELY RKLGNMFGID NSETLNHVLY 660 RDVSGAVKHV GDEQFSDFIK TARRLTILTD SGSNNVGA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-83 | 18 | 397 | 51 | 394 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC843343 | 0.0 | KC843343.1 Cucumis sativus auxin response factor 10b (ARF10b) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004143252.1 | 0.0 | PREDICTED: auxin response factor 18 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A0A0KID3 | 0.0 | A0A0A0KID3_CUCSA; Auxin response factor | ||||
STRING | XP_004143252.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF637 | 34 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.124410.1 |
Entrez Gene | 101217039 |
Publications ? help Back to Top | |||
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