PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.121900.1
Common NameCsa_1G042780
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WOX
Protein Properties Length: 368aa    MW: 41402.7 Da    PI: 5.6358
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.121900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.58.2e-2280139357
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     +R+++t+eql++Leel+++ +r+psa+++++++++l    +++ ++V++WFqN++a+e++
  Cucsa.121900.1  80 SRWNPTPEQLRVLEELYRRgTRTPSADQIQHITSQLrrygKIEGKNVFYWFQNHKARERQ 139
                     7*****************99**************************************97 PP
2Wus_type_Homeobox117.37e-3879141365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ+++Leely++G+rtP++++iq+it++L++yGkie+kNVfyWFQN+kaRerqk+
     Cucsa.121900.1  79 SSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITSQLRRYGKIEGKNVFYWFQNHKARERQKR 141
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.3E-577144IPR001356Homeobox domain
SuperFamilySSF466894.06E-1379145IPR009057Homeodomain-like
PfamPF000462.0E-1980139IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.8E-980139IPR009057Homeodomain-like
CDDcd000862.51E-681141No hitNo description
PROSITE profilePS5007111.04685140IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MWMMGYNDAQ DLNFPSDNSF NSRKLRPLIP RPLSSSSSSS HTNDFFSQFH HMATSVADQS  60
KRELNNVLSP SSSPPVVVSS RWNPTPEQLR VLEELYRRGT RTPSADQIQH ITSQLRRYGK  120
IEGKNVFYWF QNHKARERQK RRRQMESSAI TTADHSTRDL DVLERKDSGS GRTVYEEQTK  180
NWVPSTNCST LPEESVPIQG AAKGNVMGAT DCRTENGWIQ FEELHQIRNN NTNTNNFAEK  240
DTNNIIINNN NNNINSPPSL QLLHCFPATA ALRGGSQLMM NIAPITTTAT VTTIMHPKCH  300
RRSNINVISG NFDVIGVEEE LEDEEEEEEE EAECGESETL QLFPLCSDRR NGGEIVGGKN  360
NNGCETN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011660351.10.0PREDICTED: WUSCHEL-related homeobox 1
SwissprotQ6X7K04e-60WOX1_ARATH; WUSCHEL-related homeobox 1
TrEMBLA0A0A0LVV60.0A0A0A0LVV6_CUCSA; Uncharacterized protein
STRINGXP_004137626.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.12e-45WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]