PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 202aa MW: 22531.7 Da PI: 10.1741

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.120830.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.7	2e-13	20	66	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+Er+RR+++N++f Lr+++P+ +++Ka+ L Av YI+ L Cucsa.120830.1 20 MNHVEAERQRREKLNNRFYALRSVVPNV-----SRMDKASLLSDAVSYINAL 66 689**********************6.....4*************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.72E-19	15	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.25	17	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.0E-11	20	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.54E-13	20	71	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.1E-18	21	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-16	23	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MKKTGQKRGR KPNMSKENAM NHVEAERQRR EKLNNRFYAL RSVVPNVSRM DKASLLSDAV 60 SYINALKAKV EEMELQLRES KKSRDEGGDN QSTTTTSEEL MKGNSGGGVT TPTITTTTTT 120 MTRFDVEVKI IGRDAMVRVQ SQNLNFPSAI VMGVFRDMEF EIQHASITNV NDIMLQDVLI 180 KLPHGFSTDE ALKAAVLSRL H*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5gnj_A	8e-26	14	70	1	57	Transcription factor MYC2
5gnj_B	8e-26	14	70	1	57	Transcription factor MYC2
5gnj_E	8e-26	14	70	1	57	Transcription factor MYC2
5gnj_F	8e-26	14	70	1	57	Transcription factor MYC2
5gnj_G	8e-26	14	70	1	57	Transcription factor MYC2
5gnj_I	8e-26	14	70	1	57	Transcription factor MYC2
5gnj_M	8e-26	14	70	1	57	Transcription factor MYC2
5gnj_N	8e-26	14	70	1	57	Transcription factor MYC2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681925	0.0	LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004140617.1	1e-144	PREDICTED: transcription factor MYC2-like
TrEMBL	A0A0A0KFN7	1e-142	A0A0A0KFN7_CUCSA; Uncharacterized protein
STRING	XP_004166899.1	1e-144	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF841	34	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	6e-50	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.120830.1
Entrez Gene	101216876

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]