PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.120830.1
Common NameCsa_6G107910, LOC101216876
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 202aa    MW: 22531.7 Da    PI: 10.1741
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.120830.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72e-132066354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    ++h e+Er+RR+++N++f  Lr+++P+       +++Ka+ L  Av YI+ L
  Cucsa.120830.1 20 MNHVEAERQRREKLNNRFYALRSVVPNV-----SRMDKASLLSDAVSYINAL 66
                    689************************6.....4***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.72E-191581IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.251766IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-112066IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.54E-132071No hitNo description
Gene3DG3DSA:4.10.280.103.1E-182183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-162372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MKKTGQKRGR KPNMSKENAM NHVEAERQRR EKLNNRFYAL RSVVPNVSRM DKASLLSDAV  60
SYINALKAKV EEMELQLRES KKSRDEGGDN QSTTTTSEEL MKGNSGGGVT TPTITTTTTT  120
MTRFDVEVKI IGRDAMVRVQ SQNLNFPSAI VMGVFRDMEF EIQHASITNV NDIMLQDVLI  180
KLPHGFSTDE ALKAAVLSRL H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-261470157Transcription factor MYC2
5gnj_B8e-261470157Transcription factor MYC2
5gnj_E8e-261470157Transcription factor MYC2
5gnj_F8e-261470157Transcription factor MYC2
5gnj_G8e-261470157Transcription factor MYC2
5gnj_I8e-261470157Transcription factor MYC2
5gnj_M8e-261470157Transcription factor MYC2
5gnj_N8e-261470157Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819250.0LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140617.11e-144PREDICTED: transcription factor MYC2-like
TrEMBLA0A0A0KFN71e-142A0A0A0KFN7_CUCSA; Uncharacterized protein
STRINGXP_004166899.11e-144(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.16e-50bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]