PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 336aa MW: 35925.3 Da PI: 7.0948

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.120670.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.1	1.8e-09	305	330	5	30
HHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 5 hnerErrRRdriNsafeeLrellPka 30 hn+ Er+RRd+iN+++ +L++l+P++ Cucsa.120670.1 305 HNQSERKRRDKINQRMKTLQKLVPNS 330 9***********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.31E-8	298	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.325	300	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-9	304	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.9E-7	305	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.05E-7	305	333	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0009506	Cellular Component	plasmodesma
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MSQCVPNWDL SEPPPSSAAA GRPPFQSSSS ADDVVPLFEY EVAELTWENG QLSMHGLGLP 60 RVTGKIQNSG GGGGVGSKYT WDNKPARASG TLESLVNQGT RHGKNNISFD INTDDTSHGG 120 ANDLVPWFSD HHRQTPTAST ADAMVPCDGE KSATVGGGGD KSSDIPVAAR KEDEDCRVIH 180 GKRGKVVARV VHAEGEWSSC RNQISVSGNR ESGQKVTLNS SRDRNFVAVD VSVGFTATTA 240 TSQGSLDNTS SDKPCVKNTT VTTTDDHDSV CHSTHQVEEE DEGDRKKENA KSSVSTKRSR 300 AAAIHNQSER KRRDKINQRM KTLQKLVPNS NKGLA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	308	313	ERKRRD
2	309	314	RKRRDK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00034	PBM	Transfer from AT4G00050	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681925	0.0	LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011656866.1	0.0	PREDICTED: transcription factor UNE10
TrEMBL	A0A0A0KCL1	0.0	A0A0A0KCL1_CUCSA; Uncharacterized protein
STRING	XP_004164979.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5676	33	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	7e-51	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.120670.1
Entrez Gene	101215198

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]