PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.120670.1
Common NameCsa_6G108570, LOC101215198
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 336aa    MW: 35925.3 Da    PI: 7.0948
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.120670.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.8e-09305330530
                     HHHHHHHHHHHHHHHHHHHHCTSCCC CS
             HLH   5 hnerErrRRdriNsafeeLrellPka 30 
                     hn+ Er+RRd+iN+++ +L++l+P++
  Cucsa.120670.1 305 HNQSERKRRDKINQRMKTLQKLVPNS 330
                     9***********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-8298332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.325300335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-9304330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-7305330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.05E-7305333No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MSQCVPNWDL SEPPPSSAAA GRPPFQSSSS ADDVVPLFEY EVAELTWENG QLSMHGLGLP  60
RVTGKIQNSG GGGGVGSKYT WDNKPARASG TLESLVNQGT RHGKNNISFD INTDDTSHGG  120
ANDLVPWFSD HHRQTPTAST ADAMVPCDGE KSATVGGGGD KSSDIPVAAR KEDEDCRVIH  180
GKRGKVVARV VHAEGEWSSC RNQISVSGNR ESGQKVTLNS SRDRNFVAVD VSVGFTATTA  240
TSQGSLDNTS SDKPCVKNTT VTTTDDHDSV CHSTHQVEEE DEGDRKKENA KSSVSTKRSR  300
AAAIHNQSER KRRDKINQRM KTLQKLVPNS NKGLA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308313ERKRRD
2309314RKRRDK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819250.0LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011656866.10.0PREDICTED: transcription factor UNE10
TrEMBLA0A0A0KCL10.0A0A0A0KCL1_CUCSA; Uncharacterized protein
STRINGXP_004164979.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.17e-51bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]