PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.120160.1
Common NameCsa_6G113560
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family CO-like
Protein Properties Length: 416aa    MW: 45466.6 Da    PI: 4.9279
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.120160.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.42.2e-06445540
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                    +C+ +++++   +C+++  +lC +C  + H+       Ht++
  Cucsa.120160.1  4 MCDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnalsrrHTRT 45
                    7*****************************657888889876 PP
2zf-B_box18.25.3e-064790541
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                     C++++ ++ +  C + ++ lC++C  ++H +       H++++
  Cucsa.120160.1 47 LCERCHLQPSTVRCIEERVSLCQNCDWTGHGSstlasssHKRQT 90
                    7*****************************54888888898776 PP
3CCT608e-21358401144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R+ a++RYkeK+ktRkFeK++rY++RKa+A+ R RvKGrFvk+ 
  Cucsa.120160.1 358 RNSAVQRYKEKKKTRKFEKTVRYATRKARADVRRRVKGRFVKAG 401
                     999**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.627147IPR000315B-box-type zinc finger
CDDcd000217.03E-7347No hitNo description
SMARTSM003361.7E-9447IPR000315B-box-type zinc finger
CDDcd000210.003724791No hitNo description
PROSITE profilePS5101715.17358400IPR010402CCT domain
PfamPF062033.9E-16358400IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MGFMCDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSR RHTRTLLCER CHLQPSTVRC  60
IEERVSLCQN CDWTGHGSST LASSSHKRQT INCYSGCPSA AELSCIWSFV LDVPSVNDAC  120
EKELGLMSIA ETDLTGAWSP SENNAGQRMP GSTEASDVCS REKSNVLVGS SSLIGSRPHT  180
SDQPVELDNV ALPKFCCPGT KVAEFCGEDD DLYKEFDMDE MDLNLENYED LFSMSLNHSE  240
EFFENGGIDS FFEAKGLSFE DSVSHSAVVA EGSSMGVVQQ MQPAYSNGAS ADSVMSTKTE  300
PILCFNSRQA QSGMSFSGLT GESSAGDHQD CGASSMLLMG EPPWCAPGTE SSFPSTDRNS  360
AVQRYKEKKK TRKFEKTVRY ATRKARADVR RRVKGRFVKA GEAYDYDPLN QARSC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819170.0LN681917.1 Cucumis melo genomic scaffold, anchoredscaffold00085.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004139988.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X2
SwissprotQ9SSE51e-143COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A0A0KCQ60.0A0A0A0KCQ6_CUCSA; Uncharacterized protein
STRINGXP_004154511.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43623353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-124CONSTANS-like 9
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]