PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.118620.1

Common Name

Csa_6G135450, LOC101203964

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 366aa MW: 41709.6 Da PI: 4.8338

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.118620.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.2	1e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv +yL +k++g+++el e+i+e+d+yk+ePw+Lp k + +++ ewyf+s+rd+ky++g+r+nratk gyWkatgkd+ v Cucsa.118620.1 6 LPPGFRFHPTDEELVAYYLDRKINGRSIEL-EIIPEIDLYKCEPWELPdKsFLPSKDMEWYFYSPRDRKYPNGSRTNRATKGGYWKATGKDRVVQ 99 79**************************.99**********96435566888******************************999 PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s ++++vg+kktLv+ykgrap+g++t+Wvmheyrl Cucsa.118620.1 100 S-QKRAVGMKKTLVYYKGRAPHGVRTNWVMHEYRL 133 9.9999*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-64	3	160	IPR003441	NAC domain
PROSITE profile	PS51005	60.863	6	160	IPR003441	NAC domain
Pfam	PF02365	4.3E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MAPMTLPPGF RFHPTDEELV AYYLDRKING RSIELEIIPE IDLYKCEPWE LPDKSFLPSK 60 DMEWYFYSPR DRKYPNGSRT NRATKGGYWK ATGKDRVVQS QKRAVGMKKT LVYYKGRAPH 120 GVRTNWVMHE YRLLHSQLAT ATTSSPSTKD SYALCRVFKK ATIVPKTVGE KTNGVDPEAP 180 VWQMADEQDM QVDDGGGAPE SSRGGIESNE DGDSFDHFLY EYNPKIFSSE NSSSDLTQGN 240 VADDLPVLVT SDNEANSSAD NLYPIHIDCP SNYMQIPNNF IEHENNLHYQ HPYYPPLEVE 300 DFPQLNIMGE TKSLMKPECM DEYMKSFDKF RDSMNGSLEE ILSLCSLPNM QEDNHNLQQH 360 SSLLQ*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MAPMTLPPGF RFHPTDEELV AYYLDRKING RSIELEIIPE IDLYKCEPWE LPDKSFLPSK  60
DMEWYFYSPR DRKYPNGSRT NRATKGGYWK ATGKDRVVQS QKRAVGMKKT LVYYKGRAPH  120
GVRTNWVMHE YRLLHSQLAT ATTSSPSTKD SYALCRVFKK ATIVPKTVGE KTNGVDPEAP  180
VWQMADEQDM QVDDGGGAPE SSRGGIESNE DGDSFDHFLY EYNPKIFSSE NSSSDLTQGN  240
VADDLPVLVT SDNEANSSAD NLYPIHIDCP SNYMQIPNNF IEHENNLHYQ HPYYPPLEVE  300
DFPQLNIMGE TKSLMKPECM DEYMKSFDKF RDSMNGSLEE ILSLCSLPNM QEDNHNLQQH  360
SSLLQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-58	1	166	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-58	1	166	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-58	1	166	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-58	1	166	12	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-58	1	166	15	174	NAC domain-containing protein 19
3swm_B	4e-58	1	166	15	174	NAC domain-containing protein 19
3swm_C	4e-58	1	166	15	174	NAC domain-containing protein 19
3swm_D	4e-58	1	166	15	174	NAC domain-containing protein 19
3swp_A	4e-58	1	166	15	174	NAC domain-containing protein 19
3swp_B	4e-58	1	166	15	174	NAC domain-containing protein 19
3swp_C	4e-58	1	166	15	174	NAC domain-containing protein 19
3swp_D	4e-58	1	166	15	174	NAC domain-containing protein 19
4dul_A	3e-58	1	166	12	171	NAC domain-containing protein 19
4dul_B	3e-58	1	166	12	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00205	DAP	Transfer from AT1G54330	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681921	0.0	LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011656972.1	0.0	PREDICTED: NAC domain-containing protein 68
TrEMBL	A0A0A0KD62	0.0	A0A0A0KD62_CUCSA; Uncharacterized protein
STRING	XP_008456283.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10508	33	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54330.1	1e-104	NAC domain containing protein 20

Link Out ? help Back to Top
Phytozome	Cucsa.118620.1
Entrez Gene	101203964

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]