PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Cucsa.118610.2

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

G2-like

Protein Properties

Length: 300aa MW: 32889.3 Da PI: 8.7094

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.118610.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	33	1.3e-10	1	23	33	55
G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55 +++m+vkgLtl+h+kSHLQk+Rl Cucsa.118610.2 1 MRVMGVKGLTLYHLKSHLQKFRL 23 789*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-9	1	24	IPR009057	Homeodomain-like
Pfam	PF14379	3.7E-21	65	104	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MRVMGVKGLT LYHLKSHLQK FRLGKQPHKE FNDQSIKDGI RASALELQRN SGSSSTLMDR 60 SMNEMHMEVQ RRLHEQIEVQ RHLQLRIEAQ GKYMQSILEK ACQTLAGENI AAATAASAGP 120 FKTTSNNMGT TTNLVSDAAI KDFISPHHTF PPFQDMNNLF NSDPPPPPPP LIDCLKKPSP 180 FISGAGKTPI FWPDDLRLQD LGTPSATLAP APPPIGGPPD LDSLQLEMYE SKPPPPTPLL 240 AVGNNAMNEK KFDMTLKLER PSPPRSGHSD ERVNNNNNGM ANNNNPTMSQ PQGRNSSFG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681921	0.0	LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004140019.1	0.0	PREDICTED: myb family transcription factor APL
TrEMBL	A0A1S3C2G3	0.0	A0A1S3C2G3_CUCME; myb family transcription factor APL-like
STRING	XP_004140019.1	0.0	(Cucumis sativus)
STRING	XP_004173469.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.1	3e-65	G2-like family protein

Link Out ? help Back to Top
Phytozome	Cucsa.118610.2