PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.118610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 364aa MW: 40005.5 Da PI: 9.1212 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.9 | 1.2e-33 | 33 | 87 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl Cucsa.118610.1 33 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 87 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.347 | 30 | 90 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-32 | 30 | 88 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.67E-16 | 32 | 88 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-23 | 33 | 88 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-7 | 35 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.8E-21 | 129 | 168 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 364 aa Download sequence Send to blast |
MYHATKKPSS MTSHDRPMCV QGDSGLVLTT DPKPRLRWTV ELHERFVDAV TQLGGPDKAT 60 PKTIMRVMGV KGLTLYHLKS HLQKFRLGKQ PHKEFNDQSI KDGIRASALE LQRNSGSSST 120 LMDRSMNEMH MEVQRRLHEQ IEVQRHLQLR IEAQGKYMQS ILEKACQTLA GENIAAATAA 180 SAGPFKTTSN NMGTTTNLVS DAAIKDFISP HHTFPPFQDM NNLFNSDPPP PPPPLIDCLK 240 KPSPFISGAG KTPIFWPDDL RLQDLGTPSA TLAPAPPPIG GPPDLDSLQL EMYESKPPPP 300 TPLLAVGNNA MNEKKFDMTL KLERPSPPRS GHSDERVNNN NNGMANNNNP TMSQPQGRNS 360 SFG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-19 | 33 | 89 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-19 | 33 | 89 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-19 | 33 | 89 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-19 | 33 | 89 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-19 | 33 | 89 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-19 | 33 | 89 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-19 | 33 | 89 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-19 | 33 | 89 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-19 | 33 | 89 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-19 | 33 | 89 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-19 | 33 | 89 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-19 | 33 | 89 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681921 | 0.0 | LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004140019.1 | 0.0 | PREDICTED: myb family transcription factor APL | ||||
Swissprot | Q9SAK5 | 1e-105 | APL_ARATH; Myb family transcription factor APL | ||||
TrEMBL | A0A1S3C2G3 | 0.0 | A0A1S3C2G3_CUCME; myb family transcription factor APL-like | ||||
STRING | XP_004140019.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4964 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G79430.2 | 1e-107 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.118610.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|