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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cucsa.118370.1 |
Common Name | Csa_6G139130, LOC101220394 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
LBD |
Protein Properties |
Length: 174aa MW: 19085.7 Da PI: 7.8411 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.118370.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 146.2 | 9.1e-46 | 15 | 114 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95
+CaaCk+lrr+Ca+dCv+apyfpa++p+kfa vhk+FGasnv k+l++lpe++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++la
Cucsa.118370.1 15 PCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLA 109
7********************************************************************************************** PP
DUF260 96 llkee 100
+++e
Cucsa.118370.1 110 IAQAE 114
99876 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 174 aa
Download sequence Send
to blast |
MKEISGRKQG TSLSPCAACK LLRRRCAQDC VFAPYFPADE PHKFASVHKV FGASNVNKML 60 QELPEQQRSD AVSSMVYEAN ARVRDPVYGC VGAISSLQQQ IDLLQTQLAI AQAEVVHMRM 120 RHFPSSSYNP TAGHSPETAS PSSKMNIPAP NKSYFSMDMV DHDSMGETLW SSC*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | LN683706 | 1e-152 | LN683706.1 Cucumis melo genomic scaffold, unassembled_sequence31212. |