PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.118330.1
Common NameCsa_6G139170, LOC101221571
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 323aa    MW: 37050.6 Da    PI: 8.1745
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.118330.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.22.9e-48191473128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                     pGfrFhPtdeelv++yL++kv++k+++l e ik++diy+++PwdLp   ++++eke+y F+kr +ky+++ r+nr+t +g+Wkatg dk+++s+ 
  Cucsa.118330.1  19 PGFRFHPTDEELVDYYLRRKVDKKSVTL-ELIKQIDIYRHNPWDLPyGGAATGEKECYVFVKRGRKYKNSVRPNRVTGAGFWKATGIDKPIYSQe 112
                     9************************999.89***************667778999**************************************97 PP

             NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++ +glkktLvfykg+a +g+kt+W+mhe+rl
  Cucsa.118330.1 113 geGNRCIGLKKTLVFYKGSAGRGVKTEWMMHEFRL 147
                     666666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.02E-5116175IPR003441NAC domain
PROSITE profilePS5100550.63617175IPR003441NAC domain
PfamPF023656.3E-2419147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MATTSPPDPD MDDYQFPLPG FRFHPTDEEL VDYYLRRKVD KKSVTLELIK QIDIYRHNPW  60
DLPYGGAATG EKECYVFVKR GRKYKNSVRP NRVTGAGFWK ATGIDKPIYS QEGEGNRCIG  120
LKKTLVFYKG SAGRGVKTEW MMHEFRLPPI TSSSSHFSKT EQEAEIWTLC RIFKRNVTCR  180
RYNWKEIPGS NRPEITKITK TCSNIVNHDQ SSYDGVDQRA TYISFSSNSY NGFELEKKPF  240
LASEEKKEWE EFTMKKKMKR NNSELAAEVL SVSPPLSVNQ SPASSGFSNF DENGTQYFGS  300
SDDWEELRSI VDFGFDPFSN NL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-451917517168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819210.0LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004150047.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
TrEMBLA0A0A0KEH50.0A0A0A0KEH5_CUCSA; Uncharacterized protein
STRINGXP_004150047.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.13e-82NAC domain containing protein 42
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]