PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.118320.1

Common Name

Csa_6G139190, LOC101221797

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 327aa MW: 37774 Da PI: 6.9366

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.118320.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	157.3	6.6e-49	17	145	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 pGfrFhPtdeelv++yL++kv++k+l++ e ik++diyk+ PwdLp++ ++ +ekewyfF+kr +ky+++ r+nr+t g+Wkatg dk+++s Cucsa.118320.1 17 PGFRFHPTDEELVNFYLRRKVHNKPLPI-ELIKQIDIYKYSPWDLPHASNSgtlGEKEWYFFCKRGRKYKNSVRPNRVTGCGFWKATGIDKPIYS 110 9*************************.89***********53333345889********************************** PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + lvglkktLv+y+g+a +g+kt+W+m+e+rl Cucsa.118320.1 111 NdRCVLVGLKKTLVYYRGSAGRGTKTEWMMNEFRL 145 855567*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	52.671	15	182	IPR003441	NAC domain
SuperFamily	SSF101941	5.89E-54	15	182	IPR003441	NAC domain
Pfam	PF02365	3.2E-25	17	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MTAIDNNDND DSQFPLPGFR FHPTDEELVN FYLRRKVHNK PLPIELIKQI DIYKYSPWDL 60 PHASNSGTLG EKEWYFFCKR GRKYKNSVRP NRVTGCGFWK ATGIDKPIYS NDRCVLVGLK 120 KTLVYYRGSA GRGTKTEWMM NEFRLPSSSS SSPYSSDPFR RNIIKNNLHE AEIWTLCRIF 180 KRNISTKKAI NAPNWREVPS AKISRAVENM NFRATKNIDI DRYSDDNEQS SYISFTSNNS 240 FISFDHMNDV QNFDQSRMSH DSQMMTNFCS LTDQHSSADH NSSANVSPSS SSFSDFDEDA 300 SDLFGYEKWE ELKSILECDF DSLNQF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-46	17	188	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-46	17	188	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-46	17	188	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-46	17	188	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-46	17	188	22	174	NAC domain-containing protein 19
3swm_B	2e-46	17	188	22	174	NAC domain-containing protein 19
3swm_C	2e-46	17	188	22	174	NAC domain-containing protein 19
3swm_D	2e-46	17	188	22	174	NAC domain-containing protein 19
3swp_A	2e-46	17	188	22	174	NAC domain-containing protein 19
3swp_B	2e-46	17	188	22	174	NAC domain-containing protein 19
3swp_C	2e-46	17	188	22	174	NAC domain-containing protein 19
3swp_D	2e-46	17	188	22	174	NAC domain-containing protein 19
4dul_A	2e-46	17	188	19	171	NAC domain-containing protein 19
4dul_B	2e-46	17	188	19	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681921	0.0	LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011658407.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	2e-79	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A0A0KD91	0.0	A0A0A0KD91_CUCSA; Uncharacterized protein
STRING	XP_004173216.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1013	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	8e-78	NAC domain containing protein 42

Link Out ? help Back to Top
Phytozome	Cucsa.118320.1
Entrez Gene	101221797

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]