PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.113490.4
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 442aa    MW: 49685 Da    PI: 8.5913
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.113490.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH56.84.1e-18145194255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r +h++ E+rRR++iN++f++Lrel+P +    ++K +Ka+ L +++eYI+ Lq
  Cucsa.113490.4 145 RSKHSATEQRRRSKINDRFQKLRELIPRS----DQKRDKASFLLEVIEYIQFLQ 194
                     889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.1E-22140202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-18142202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.091143193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-15145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.32E-15145198No hitNo description
SMARTSM003532.2E-12149199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MKLVHVHMWA FSSQLSICVY SEFWYQYIFS LIIFPDRTDI LFFIAESPAK IEQWTVTTER  60
PMQSSSSNHR SSFSSLSPSQ PSGQQSRSFG EMLKSTVNVS SMEEELDDDK AFVIKKESSP  120
STAYKGDLKI NICGKSSDQK ANTPRSKHSA TEQRRRSKIN DRFQKLRELI PRSDQKRDKA  180
SFLLEVIEYI QFLQEKVRKY ESSPPQGWYH EPAKLIPCRN NCNPAQCYID QSQIAKSGPV  240
FIFAGSDEKN MCHSPAFPRC SHNPVESEVS TSTTFREADQ HPGTNNKTCY PMLDPRHFTP  300
VISEGAKTRL HSQVGHNADN KPCEIQPLSC EMRSCTTNIV DGNNKLKEPE QRIDGGRISI  360
SGAYSQGLLK ILTQALQSSG VDMSQASVAV QIELGKRTNY REIVPSPIVD DSARPSERAS  420
VGTRVIAGEN MEQALRKKQK T*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650369.10.0PREDICTED: transcription factor BIM1 isoform X1
TrEMBLA0A0A0LSX00.0A0A0A0LSX0_CUCSA; Uncharacterized protein
STRINGXP_004157432.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.13e-58bHLH family protein