PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.113490.3

Common Name

Csa_1G039980, LOC101204688

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 529aa MW: 58540.7 Da PI: 9.3195

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.113490.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	56.4	5.3e-18	232	281	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f++Lrel+P + ++K +Ka+ L +++eYI+ Lq Cucsa.113490.3 232 RSKHSATEQRRRSKINDRFQKLRELIPRS----DQKRDKASFLLEVIEYIQFLQ 281 889***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.5E-22	227	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.85E-18	229	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.091	230	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.80E-15	232	285	No hit	No description
Pfam	PF00010	1.7E-15	232	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-12	236	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence Send to blast
MRTGGFLKTH DFLRPLERTG KTCAKEEKTI NVSTVERAAP TLGTQAHNSA AERLLPGGIG 60 TYSISHISYF NQRVPKPEGS VFPVPQASNT DKSDDNSRCS SLSGNGFTLW EESAVKKGKT 120 RKENLGEKPA LKESPAKIEQ WTVTTERPMQ SSSSNHRSSF SSLSPSQPSG QQSRSFGEML 180 KSTVNVSSME EELDDDKAFV IKKESSPSTA YKGDLKINIC GKSSDQKANT PRSKHSATEQ 240 RRRSKINDRF QKLRELIPRS DQKRDKASFL LEVIEYIQFL QEKVRKYESS PPQGWYHEPA 300 KLIPCRNNCN PAQCYIDQSQ IAKSGPVFIF AGSDEKNMCH SPAFPRCSHN PVESEVSTST 360 TFREADQHPG TNNKTCYPML DPRHFTPVIS EGAKTRLHSQ VGHNADNKPC EIQPLSCEMR 420 SCTTNIVDGN NKLKEPEQRI DGGRISISGA YSQGLLKILT QALQSSGVDM SQASVAVQIE 480 LGKRTNYREI VPSPIVDDSA RPSERASVGT RVIAGENMEQ ALRKKQKT*

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence Send to blast

MRTGGFLKTH DFLRPLERTG KTCAKEEKTI NVSTVERAAP TLGTQAHNSA AERLLPGGIG  60
TYSISHISYF NQRVPKPEGS VFPVPQASNT DKSDDNSRCS SLSGNGFTLW EESAVKKGKT  120
RKENLGEKPA LKESPAKIEQ WTVTTERPMQ SSSSNHRSSF SSLSPSQPSG QQSRSFGEML  180
KSTVNVSSME EELDDDKAFV IKKESSPSTA YKGDLKINIC GKSSDQKANT PRSKHSATEQ  240
RRRSKINDRF QKLRELIPRS DQKRDKASFL LEVIEYIQFL QEKVRKYESS PPQGWYHEPA  300
KLIPCRNNCN PAQCYIDQSQ IAKSGPVFIF AGSDEKNMCH SPAFPRCSHN PVESEVSTST  360
TFREADQHPG TNNKTCYPML DPRHFTPVIS EGAKTRLHSQ VGHNADNKPC EIQPLSCEMR  420
SCTTNIVDGN NKLKEPEQRI DGGRISISGA YSQGLLKILT QALQSSGVDM SQASVAVQIE  480
LGKRTNYREI VPSPIVDDSA RPSERASVGT RVIAGENMEQ ALRKKQKT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	0.0	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011650371.1	0.0	PREDICTED: transcription factor BIM1 isoform X2
TrEMBL	A0A0A0LSX0	0.0	A0A0A0LSX0_CUCSA; Uncharacterized protein
STRING	XP_004157432.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	2e-85	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.113490.3
Entrez Gene	101204688

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]