PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.113490.2

Common Name

Csa_1G039980, LOC101204688

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 566aa MW: 62627.1 Da PI: 9.083

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.113490.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	56.3	5.8e-18	269	318	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f++Lrel+P + ++K +Ka+ L +++eYI+ Lq Cucsa.113490.2 269 RSKHSATEQRRRSKINDRFQKLRELIPRS----DQKRDKASFLLEVIEYIQFLQ 318 889***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.6E-22	264	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.64E-18	266	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.091	267	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-15	269	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.56E-15	269	322	No hit	No description
SMART	SM00353	2.2E-12	273	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence Send to blast
MELPQPPRPL GTEGRKPTHD FLSLYGHSTA LQQDPSQSFQ GGFLKTHDFL RPLERTGKTC 60 AKEEKTINVS TVERAAPTLG TQAHNSAAER LLPGGIGTYS ISHISYFNQR VPKPEGSVFP 120 VPQASNTDKS DDNSRCSSLS GNGFTLWEES AVKKGKTRKE NLGEKPALKE SPAKIEQWTV 180 TTERPMQSSS SNHRSSFSSL SPSQPSGQQS RSFGEMLKST VNVSSMEEEL DDDKAFVIKK 240 ESSPSTAYKG DLKINICGKS SDQKANTPRS KHSATEQRRR SKINDRFQKL RELIPRSDQK 300 RDKASFLLEV IEYIQFLQEK VRKYESSPPQ GWYHEPAKLI PCRNNCNPAQ CYIDQSQIAK 360 SGPVFIFAGS DEKNMCHSPA FPRCSHNPVE SEVSTSTTFR EADQHPGTNN KTCYPMLDPR 420 HFTPVISEGA KTRLHSQVGH NADNKPCEIQ PLSCEMRSCT TNIVDGNNKL KEPEQRIDGG 480 RISISGAYSQ GLLKILTQAL QSSGVDMSQA SVAVQIELGK RTNYREIVPS PIVDDSARPS 540 ERASVGTRVI AGENMEQALR KKQKT*

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence Send to blast

MELPQPPRPL GTEGRKPTHD FLSLYGHSTA LQQDPSQSFQ GGFLKTHDFL RPLERTGKTC  60
AKEEKTINVS TVERAAPTLG TQAHNSAAER LLPGGIGTYS ISHISYFNQR VPKPEGSVFP  120
VPQASNTDKS DDNSRCSSLS GNGFTLWEES AVKKGKTRKE NLGEKPALKE SPAKIEQWTV  180
TTERPMQSSS SNHRSSFSSL SPSQPSGQQS RSFGEMLKST VNVSSMEEEL DDDKAFVIKK  240
ESSPSTAYKG DLKINICGKS SDQKANTPRS KHSATEQRRR SKINDRFQKL RELIPRSDQK  300
RDKASFLLEV IEYIQFLQEK VRKYESSPPQ GWYHEPAKLI PCRNNCNPAQ CYIDQSQIAK  360
SGPVFIFAGS DEKNMCHSPA FPRCSHNPVE SEVSTSTTFR EADQHPGTNN KTCYPMLDPR  420
HFTPVISEGA KTRLHSQVGH NADNKPCEIQ PLSCEMRSCT TNIVDGNNKL KEPEQRIDGG  480
RISISGAYSQ GLLKILTQAL QSSGVDMSQA SVAVQIELGK RTNYREIVPS PIVDDSARPS  540
ERASVGTRVI AGENMEQALR KKQKT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	0.0	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011650371.1	0.0	PREDICTED: transcription factor BIM1 isoform X2
TrEMBL	A0A0A0LSX0	0.0	A0A0A0LSX0_CUCSA; Uncharacterized protein
STRING	XP_004157432.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	1e-100	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.113490.2
Entrez Gene	101204688

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]