PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.113490.1

Common Name

Csa_1G039980, LOC101204688

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 567aa MW: 62698.2 Da PI: 9.083

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.113490.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	56.3	5.8e-18	270	319	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f++Lrel+P + ++K +Ka+ L +++eYI+ Lq Cucsa.113490.1 270 RSKHSATEQRRRSKINDRFQKLRELIPRS----DQKRDKASFLLEVIEYIQFLQ 319 889***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.6E-22	265	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.77E-18	267	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.091	268	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-15	270	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.47E-15	270	323	No hit	No description
SMART	SM00353	2.2E-12	274	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence Send to blast
MELPQPPRPL GTEGRKPTHD FLSLYGHSTA LQQDPSQSFQ GGFLKTHDFL RPLERTGKTC 60 AKEEKTINVS TVERAAPTLG TQAHNSAAER LLPGGIGTYS ISHISYFNQR VPKPEGSVFP 120 VPQASNTDKS DDNSRCSSLS GNGFTLWEES AVKKGKTRKE NLGEKPALKA ESPAKIEQWT 180 VTTERPMQSS SSNHRSSFSS LSPSQPSGQQ SRSFGEMLKS TVNVSSMEEE LDDDKAFVIK 240 KESSPSTAYK GDLKINICGK SSDQKANTPR SKHSATEQRR RSKINDRFQK LRELIPRSDQ 300 KRDKASFLLE VIEYIQFLQE KVRKYESSPP QGWYHEPAKL IPCRNNCNPA QCYIDQSQIA 360 KSGPVFIFAG SDEKNMCHSP AFPRCSHNPV ESEVSTSTTF READQHPGTN NKTCYPMLDP 420 RHFTPVISEG AKTRLHSQVG HNADNKPCEI QPLSCEMRSC TTNIVDGNNK LKEPEQRIDG 480 GRISISGAYS QGLLKILTQA LQSSGVDMSQ ASVAVQIELG KRTNYREIVP SPIVDDSARP 540 SERASVGTRV IAGENMEQAL RKKQKT*

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence Send to blast

MELPQPPRPL GTEGRKPTHD FLSLYGHSTA LQQDPSQSFQ GGFLKTHDFL RPLERTGKTC  60
AKEEKTINVS TVERAAPTLG TQAHNSAAER LLPGGIGTYS ISHISYFNQR VPKPEGSVFP  120
VPQASNTDKS DDNSRCSSLS GNGFTLWEES AVKKGKTRKE NLGEKPALKA ESPAKIEQWT  180
VTTERPMQSS SSNHRSSFSS LSPSQPSGQQ SRSFGEMLKS TVNVSSMEEE LDDDKAFVIK  240
KESSPSTAYK GDLKINICGK SSDQKANTPR SKHSATEQRR RSKINDRFQK LRELIPRSDQ  300
KRDKASFLLE VIEYIQFLQE KVRKYESSPP QGWYHEPAKL IPCRNNCNPA QCYIDQSQIA  360
KSGPVFIFAG SDEKNMCHSP AFPRCSHNPV ESEVSTSTTF READQHPGTN NKTCYPMLDP  420
RHFTPVISEG AKTRLHSQVG HNADNKPCEI QPLSCEMRSC TTNIVDGNNK LKEPEQRIDG  480
GRISISGAYS QGLLKILTQA LQSSGVDMSQ ASVAVQIELG KRTNYREIVP SPIVDDSARP  540
SERASVGTRV IAGENMEQAL RKKQKT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	0.0	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011650369.1	0.0	PREDICTED: transcription factor BIM1 isoform X1
TrEMBL	A0A0A0LSX0	0.0	A0A0A0LSX0_CUCSA; Uncharacterized protein
STRING	XP_004157432.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7252	31	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	1e-102	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.113490.1
Entrez Gene	101204688

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]