PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.113040.1
Common NameCsa_1G039000, LOC101222307
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 443aa    MW: 49160.3 Da    PI: 9.1936
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.113040.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.53.6e-16250295555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn+ ErrRRdriN+++  L++l+P+a      K +Ka++L +++eY+k+Lq
  Cucsa.113040.1 250 HNQSERRRRDRINEKMKALQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 295
                     9************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-19243306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818245294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-16250299No hitNo description
PfamPF000101.1E-13250295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-19250304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-18251300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0016607Cellular Componentnuclear speck
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MSHCVVPKWN LSHERQVQVE EEEEKRSFHV PAEKNQHSTT TKPLVPFYQQ MAKQGITELT  60
WQNGQLALHG IDGLQPTIPP KPTWNRANDT LESVVNQAKL QTQGPNLIQQ GEPVVHTGRT  120
LAPSGANGKW VERGNNQEPT ARKRTRSTSD YGGKNVSTSN NNNNNNSNTM QVDHGDHSVC  180
GSASAAFCRD NETTLMTWAS FDSPRSLKTK SIDEDSACHV ESENQEEEQD TKRVANRSHS  240
ARRSRAAAIH NQSERRRRDR INEKMKALQK LVPNASKTDK ASMLDEVIEY LKQLQAQVQF  300
MSVRSMQQMI MPIGMQQQLQ MSLLARMGMG VGLGMGMGML DMSGMARSAQ QTLPPLIHPT  360
SVPTTPPAFV PPHFLLPPSI PRQDPTQAKP ATNGSVDPFC AFLAQTMNMD IYNKMAAFYR  420
QQVNQTTNAM SSPTQSNNMQ GS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253258ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00571DAPTransfer from AT5G61270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004137596.10.0PREDICTED: transcription factor PIF7 isoform X1
TrEMBLA0A0A0LQK30.0A0A0A0LQK3_CUCSA; Uncharacterized protein
STRINGXP_004157490.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129992432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61270.17e-35phytochrome-interacting factor7
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]