PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.112840.1

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

M-type_MADS

Protein Properties

Length: 364aa MW: 41160.5 Da PI: 5.1677

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.112840.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	65.8	4.5e-21	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + e++ rqvt+skRrngi+KKA EL +LCd+++ +++fs++gk Cucsa.112840.1 10 KLESTGSRQVTYSKRRNGIMKKARELAILCDIDIVLLMFSPSGK 53 5688999***********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.376	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.5E-29	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.42E-26	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.1E-18	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.2E-20	12	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.1E-18	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.1E-18	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MGRVKLKIKK LESTGSRQVT YSKRRNGIMK KARELAILCD IDIVLLMFSP SGKPALYEGE 60 RSNIEEVITK FAELTPQERA KRKMESLEVL KKTFKKLDHD VNIDDFVGSS SQDFEELTNE 120 ASLLRDQIGE THKRLSYWRN PDSINNVDQL QQMEDLLRES LNQTRLHKEN LRRHQLLSQD 180 FTGQYSCAGM SLPLLMEEMQ GTQPLLWLAN YGTQQIPLPN EPSFLQPGDV ECSFPSYPSF 240 FNPGKQIEAG ISGQVDSMPQ GDGALNELSG TSCSTLQLSD QYPYPTCDGS NFQDEKRLKM 300 EMEMNLHAAC VDTQLNDRLE LSRSLYDDNQ HPWASIPGPC SIPMYQSNEY HHVGSLLTGP 360 SKT*

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MGRVKLKIKK LESTGSRQVT YSKRRNGIMK KARELAILCD IDIVLLMFSP SGKPALYEGE  60
RSNIEEVITK FAELTPQERA KRKMESLEVL KKTFKKLDHD VNIDDFVGSS SQDFEELTNE  120
ASLLRDQIGE THKRLSYWRN PDSINNVDQL QQMEDLLRES LNQTRLHKEN LRRHQLLSQD  180
FTGQYSCAGM SLPLLMEEMQ GTQPLLWLAN YGTQQIPLPN EPSFLQPGDV ECSFPSYPSF  240
FNPGKQIEAG ISGQVDSMPQ GDGALNELSG TSCSTLQLSD QYPYPTCDGS NFQDEKRLKM  300
EMEMNLHAAC VDTQLNDRLE LSRSLYDDNQ HPWASIPGPC SIPMYQSNEY HHVGSLLTGP  360
SKT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	5e-14	1	92	1	90	MEF2 CHIMERA
6byy_B	5e-14	1	92	1	90	MEF2 CHIMERA
6byy_C	5e-14	1	92	1	90	MEF2 CHIMERA
6byy_D	5e-14	1	92	1	90	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	0.0	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004137587.1	0.0	PREDICTED: MADS-box transcription factor 55 isoform X2
Swissprot	Q7X9I0	1e-89	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A1S3B7U6	0.0	A0A1S3B7U6_CUCME; agamous-like MADS-box protein AGL65 isoform X2
STRING	XP_004137587.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2750	33	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	4e-92	AGAMOUS-like 65

Link Out ? help Back to Top
Phytozome	Cucsa.112840.1

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]