PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.112580.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 87aa    MW: 9784.12 Da    PI: 5.6348
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.112580.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-0810521555
                    HHHHHHHHHHCTSCC.C....TTS-STCHHHHHHHHHHHHHHH CS
             HLH 15 riNsafeeLrellPk.as.kapskKlsKaeiLekAveYIksLq 55
                    ++++  ++L++llP+ +    +s  +s  eiL+++++YIk+Lq
  Cucsa.112580.1 10 ELKNLVSKLQTLLPQlNHkPHNSSEVSAGEILKETCDYIKKLQ 52
                    6777889********5555555555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.21151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-10955IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-8956IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-61052IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MASSKLGDDE LKNLVSKLQT LLPQLNHKPH NSSEVSAGEI LKETCDYIKK LQREVDDLSE  60
RLWKQLDSMG IDFEMKHATN VKSSEI*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819321e-48LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132661e-48LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011649678.11e-48PREDICTED: transcription factor PRE5-like
SwissprotQ9LJX13e-17PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A0A0LQ052e-47A0A0A0LQ05_CUCSA; DNA binding protein
STRINGXP_008440200.13e-43(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106242439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.11e-19bHLH family protein