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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cucsa.110000.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
B3 |
Protein Properties |
Length: 255aa MW: 29250.5 Da PI: 8.2021 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.110000.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 43.3 | 6.4e-14 | 2 | 75 | 18 | 97 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
+p +f++ + + s tl+ ++g +W+v l rk ++++++++GW++F + +++g +vF+++g+s+f +v +f
Cucsa.110000.1 2 IPETFVRMIRDE--LSAVATLTVPDGHVWRVGL--RKADNKFWFEDGWQGFLEHYSIRVGYLLVFRYEGNSSF--CVFIF 75
999***999644..8889***************..**********************************9999..66555 PP
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2 | B3 | 54.3 | 2.4e-17 | 144 | 221 | 17 | 98 |
E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
B3 17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
+lp fae++ +g++ ++l++++gr+W v++ y+ + r l++GW eF+ +n+L egD++vF+l + +e l+v++fr
Cucsa.110000.1 144 YLPSCFAEKNlSGVSG---FIKLQTPDGRQWPVRCLYKVG--RAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFR 221
89********866643...5***************55555..566***********************987677777777776 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 255 aa
Download sequence Send
to blast |
RIPETFVRMI RDELSAVATL TVPDGHVWRV GLRKADNKFW FEDGWQGFLE HYSIRVGYLL 60 VFRYEGNSSF CVFIFNLNTS EINYQSAALS NNQRNNYSIQ NRIFEEMEDY DIPEAIPSNQ 120 SMNSAFKLNH VSPNKGILHS PLQYLPSCFA EKNLSGVSGF IKLQTPDGRQ WPVRCLYKVG 180 RAKLSQGWYE FCLENNLGEG DVCVFELLRM REIVLKVTMF RVIEEGGRMA NPNPASMMNP 240 PPLRSVSHIK LIRN*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4i1k_A | 1e-38 | 119 | 224 | 33 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-38 | 119 | 224 | 33 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |