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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cucsa.109990.1 |
Common Name | Csa_2G237700, LOC101213202 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
B3 |
Protein Properties |
Length: 418aa MW: 47944.6 Da PI: 6.9386 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.109990.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 51.5 | 1.8e-16 | 36 | 119 | 6 | 95 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
+ ++ l+ + l +p+kfa+++gg+ +tl ++g +W ++l +++++++++++GW eFvk + +++g +vF+++g+s f+ +
Cucsa.109990.1 36 VVPSILQDKKLKIPNKFAKKFGGD--ILDLVTLVAPNGYRWVLEL--KRHGRSMWFEDGWHEFVKHHCIQVGQLLVFRFEGNSVFN--FY 119
3455566677***********999..5568***************..*********************************999994..44 PP
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2 | B3 | 63 | 4.9e-20 | 320 | 409 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
B3 5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
+ +s+ + l +p kfae++ +g+ + ++tl+ +sg++W+v++ + + ++ lt+GW +Fv +n+Lke D++vF+l++ ++ + v+vfr
Cucsa.109990.1 320 MRQSYIRRGFHLHIPSKFAEKYlKGV-WG--DITLQVSSGKQWRVRC--IREGPGTKLTRGWADFVVDNDLKEEDVCVFELINMKDIVMQVTVFR 409
66788888889***********7666.34..7***************..67777789************************98899999999998 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 418 aa
Download sequence Send
to blast |
MDNSLTAMPE SNEQEGAQSF NQTSPARRAG LFYKLVVPSI LQDKKLKIPN KFAKKFGGDI 60 LDLVTLVAPN GYRWVLELKR HGRSMWFEDG WHEFVKHHCI QVGQLLVFRF EGNSVFNFYM 120 FNLTAIPNGP CNTSNASIEQ NDGEQCPDTL GKEAEYKKLV EILGTGSPDP SPRPSVKDLV 180 CEFPDQQKFN GSCNGTSIKN FMHWFDTENL HPLKDFDNPL KHLDKLRMQL LNSNRDIGIQ 240 FDGDELAKAR ENHDFQLNQS SDEREEGAMK KKLKLEPIDY YNDNEPIDEK KCGNVPHKIN 300 RMAFGVEEFK FGNPFCWIVM RQSYIRRGFH LHIPSKFAEK YLKGVWGDIT LQVSSGKQWR 360 VRCIREGPGT KLTRGWADFV VDNDLKEEDV CVFELINMKD IVMQVTVFRV HGDPTKT*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4i1k_A | 2e-26 | 305 | 411 | 38 | 143 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 2e-26 | 305 | 411 | 38 | 143 | B3 domain-containing transcription factor VRN1 |
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