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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cucsa.108710.1 |
Common Name | Csa_3G196420, LOC101205963 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
C2H2 |
Protein Properties |
Length: 270aa MW: 29584.2 Da PI: 4.7797 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.108710.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 12.8 | 0.00036 | 112 | 134 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C + F ++ L H++ H
Cucsa.108710.1 112 FSCNYCQRKFFSSQALGGHQNAH 134
89*****************9988 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 270 aa
Download sequence Send
to blast |
MKPFLDLEKE PSCLANDSDI SSQVASSNYI SPLHENSNDN SLITNSSFFA NPNIPAADQP 60 GFESVCLDLT LNFNIEDIET RPDSTGFSLS TTSDQSSNEP TACATMAVPR VFSCNYCQRK 120 FFSSQALGGH QNAHKRERTL AKRAMRMGIL AERYASLASL PLKGSSFKSL GIKAHSSLLH 180 GIAAPMKPNE IRSSARFEPE PGYIGMPIFL EDDETEVMWP GSFRPMVETR NTDELTRPSF 240 ILTGISSISS ADKTWEDVEN STLDLTLKL*
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Functional Description ? help
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Source |
Description |
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Joseph MP, et al.
The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] - Li B, et al.
Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]
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