PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

G2-like

Protein Properties

Length: 400aa MW: 43754.1 Da PI: 8.0188

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.108670.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.3	1.5e-32	211	264	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave+LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Cucsa.108670.3 211 PRMRWTTSLHARFVHAVEHLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 264 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.79E-15	208	264	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.0E-29	209	264	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.2E-24	211	264	IPR006447	Myb domain, plants
Pfam	PF00249	2.6E-7	212	263	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009887	Biological Process	organ morphogenesis
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0009956	Biological Process	radial pattern formation
GO:0010051	Biological Process	xylem and phloem pattern formation
GO:0010158	Biological Process	abaxial cell fate specification
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MPLEGIFIEP SSTSLPDLSL QISPPNVSSS SSSSSSSSSS SYSSIRTLSH GFSETSFDLL 60 IQRNSQFQNN FSNDSRTQTE LSLGTNNNNN NSLFGGATLH PPPTLPHLRG LSMFDVSSDG 120 LRPIKGIPVY HNRPFPFLGV DQKDHHYFHQ FPSACFFPNY SNTNGNNGGG GVNQMGYHHR 180 GGGGVGGNNN NCSARFNNGV KLPPKRSMRA PRMRWTTSLH ARFVHAVEHL GGHERATPKS 240 VLELMDVKDL TLAHVKSHLQ MYRTVKTTDK PAASSGQSDG SGEDDVSPTI MGTTRGDHGG 300 SKQFSDQRAP PDRSGQSPPD VEFGCSTLWS NSSRDVWPQT NSNEMDNNVN TPTLSTQQKT 360 MHQIQECDSG AMKRYNSECK KPSLEFRLGR AEWDVKQDH*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MPLEGIFIEP SSTSLPDLSL QISPPNVSSS SSSSSSSSSS SYSSIRTLSH GFSETSFDLL  60
IQRNSQFQNN FSNDSRTQTE LSLGTNNNNN NSLFGGATLH PPPTLPHLRG LSMFDVSSDG  120
LRPIKGIPVY HNRPFPFLGV DQKDHHYFHQ FPSACFFPNY SNTNGNNGGG GVNQMGYHHR  180
GGGGVGGNNN NCSARFNNGV KLPPKRSMRA PRMRWTTSLH ARFVHAVEHL GGHERATPKS  240
VLELMDVKDL TLAHVKSHLQ MYRTVKTTDK PAASSGQSDG SGEDDVSPTI MGTTRGDHGG  300
SKQFSDQRAP PDRSGQSPPD VEFGCSTLWS NSSRDVWPQT NSNEMDNNVN TPTLSTQQKT  360
MHQIQECDSG AMKRYNSECK KPSLEFRLGR AEWDVKQDH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	8e-18	212	266	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-18	212	266	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-18	212	266	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-18	212	266	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681851	0.0	LN681851.1 Cucumis melo genomic scaffold, anchoredscaffold00038.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011651217.1	0.0	PREDICTED: transcription repressor KAN1-like isoform X3
TrEMBL	A0A0A0LBR3	0.0	A0A0A0LBR3_CUCSA; Uncharacterized protein
STRING	XP_004140729.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	9e-53	G2-like family protein

Link Out ? help Back to Top
Phytozome	Cucsa.108670.3
Entrez Gene	101204946

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]