PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.107310.1
Common NameCsa_4G051470, LOC101204004
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 356aa    MW: 39577.5 Da    PI: 5.4078
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.107310.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.72.7e-29131191259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK++ g+++prsYYrCt++   +C++ k+v+rs+edp+v+eitY+g+H+++
  Cucsa.107310.1 131 EDGYSWRKYGQKDILGATYPRSYYRCTFRntqNCWAVKQVQRSDEDPSVFEITYRGKHTCS 191
                     8**************************998889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-28122192IPR003657WRKY domain
SuperFamilySSF1182902.35E-25129192IPR003657WRKY domain
SMARTSM007747.2E-40130192IPR003657WRKY domain
PROSITE profilePS5081122.033131188IPR003657WRKY domain
PfamPF031064.2E-26131190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MESGWSWDQK SLIGELIQGM ELTKQLRAEL GSASGEESKG SLVQGILSSY EKALLILKWN  60
GPMNQLQMVE ATPGLPSSPI SVNGSPSSDD SGRVLKDPQD SRKESKKRKT QPRWTEQVKV  120
NSETGFEGPH EDGYSWRKYG QKDILGATYP RSYYRCTFRN TQNCWAVKQV QRSDEDPSVF  180
EITYRGKHTC SQGNYLAQTC HSPDKQEQKE TDGDHHELQP LQENLFGNQT IQNIEKLENK  240
ASTFCFGSSS TSVGCKDIVN AGFSSLAIDT HSALGTFPQS FTSPTSPDKN YFTPSPCQRS  300
NVGGTHSVQN LDPDVHEIFS ANTSATNSPI LDWDFPFDSD HINPNFPFNS QGFFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-17131190968OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818730.0LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149751.10.0PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A0A0KUV60.0A0A0A0KUV6_CUCSA; Uncharacterized protein
STRINGXP_004149751.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.13e-59WRKY family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]