PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.106390.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bZIP
Protein Properties Length: 168aa    MW: 19077.6 Da    PI: 7.3503
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.106390.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.23.5e-134199563
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                    ++ +r+++NRe+ArrsR RK+++++ L+  v ++ +eN++ + +++  ++++ +l++e+
  Cucsa.106390.1 41 RKRKRMISNRESARRSRMRKQKQLDDLTSQVGQIRTENEQIAVNINFTTQLYVNLEAEN 99
                    6789******************************************9999999999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.6E-1437101IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.1439102IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-941113No hitNo description
PfamPF001701.5E-104184IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-114195No hitNo description
CDDcd147027.70E-184292No hitNo description
PROSITE patternPS0003604459IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MAISKKLLCF NTRPVSMASP LGSSSGSPSS DEDLRLIVDQ RKRKRMISNR ESARRSRMRK  60
QKQLDDLTSQ VGQIRTENEQ IAVNINFTTQ LYVNLEAENS VLRAQMVELR HRLDSLNEII  120
RFMNSSSRHV YDSEENDEVC GIDGFVDSWG FPFLNQPIMA AGDLFMC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14061RKRKRMISNRESARRSRMRKQK
25360RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818730.0LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011653153.11e-108PREDICTED: ocs element-binding factor 1
SwissprotC0Z2L57e-43BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A0A0KZH61e-107A0A0A0KZH6_CUCSA; Uncharacterized protein
STRINGXP_008452107.11e-92(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61334147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.16e-44basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]