PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.105830.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 230aa    MW: 26436.8 Da    PI: 7.149
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.105830.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-184088254
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                    +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  Cucsa.105830.1 40 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 88
                    69******9.**********8.....334**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.48E-343999No hitNo description
SuperFamilySSF541716.02E-214099IPR016177DNA-binding domain
PfamPF008473.0E-114089IPR001471AP2/ERF domain
PROSITE profilePS5103221.1274097IPR001471AP2/ERF domain
SMARTSM003804.9E-4240103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-344097IPR001471AP2/ERF domain
PRINTSPR003674.1E-114152IPR001471AP2/ERF domain
PRINTSPR003674.1E-116379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
LLLLLQPKLI YIHISLFHCS LFFFFFLFDN NRSMARPQQR YRGVRQRHWG SWVSEIRHPL  60
LKTRIWLGTF ETAEDAARAY DEAARLMCGP KARTNFPYNP NDQQSSSSFS SSSKLLSAAL  120
IEKLHKCHLA SLQIAKQHVH KQHAGFEPSY LAYSGSPPPI ITGATTSQWA SDETWVYSNK  180
GDQMEMNNNN NNYNNNIHHQ QCQLEPLEDD HIEQMIQELL DLGSFEIIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1839101467ATERF1
3gcc_A4e-1839101467ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818040.0LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011659507.11e-147PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW53e-62ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A0A0KA121e-146A0A0A0KA12_CUCSA; Uncharacterized protein
STRINGXP_004169615.11e-146(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.11e-45ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]