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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cucsa.104950.1 |
| Common Name | Csa_6G501990, LOC101216890 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family |
HD-ZIP |
| Protein Properties |
Length: 225aa MW: 25661 Da PI: 8.9058 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.104950.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 61.8 | 1e-19 | 62 | 115 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
++++++eq++ Le F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+
Cucsa.104950.1 62 KRKLSSEQVKLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 115
56899***********************************************95 PP
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| 2 | HD-ZIP_I/II | 118.3 | 4.4e-38 | 61 | 152 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
kkr+ls+eqvklLE++F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+a+d+++ ++++Le+e +++e+lke
Cucsa.104950.1 61 KKRKLSSEQVKLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHDSVVLQKSHLESELMKVKEQLKE 152
9****************************************************************************************997 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 225 aa
Download sequence Send
to blast |
MAAVNLRPDA DNSLLVSHLY NPEVYTQQVL PQQGTGEGSK PTKRRRRRSK AKEGGGAAGL 60
KKRKLSSEQV KLLEMNFGNE HKLESERKDR LASELGLDPR QVAVWFQNRR ARWKNKKLEE 120
EYSTLKKAHD SVVLQKSHLE SELMKVKEQL KEAKNEIRKM VEGSEVRNNS SNSPSSSVTM 180
EAVEEAAVVP LGELFFEEYE DVFYCMQDNN YNQGLDWALN LNFM*
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| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 42 | 47 | KRRRRR |
| 2 | 45 | 63 | RRRSKAKEGGGAAGLKKRK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
| Publications
? help Back to Top |
- Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome.
PLoS ONE, 2009. 4(6): p. e5795
[PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
BMC Genomics, 2010. 11: p. 384
[PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
BMC Genomics, 2011. 12: p. 540
[PMID:22047402] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - González-Grandío E, et al.
Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
[PMID:28028241]
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