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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cucsa.104330.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family |
C2H2 |
| Protein Properties |
Length: 237aa MW: 26540.4 Da PI: 8.0408 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.104330.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 23.6 | 1.3e-07 | 43 | 64 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23
C++Cgk F+r nL+ H+r H
Cucsa.104330.1 43 FCEICGKGFKRDANLRMHMRAH 64
6*******************99 PP
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| 2 | zf-C2H2 | 12.1 | 0.0006 | 163 | 178 | 6 | 21 |
TTEEESSHHHHHHHHH CS
zf-C2H2 6 CgksFsrksnLkrHir 21
Cg++Fsrk+ L H+
Cucsa.104330.1 163 CGTTFSRKDKLFGHMA 178
**************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 237 aa
Download sequence Send
to blast |
KSMAELKVEG ADEIAITESE EFDPDWEIVE LDAMELLAEH IHFCEICGKG FKRDANLRMH 60
MRAHGNQFKT PEALAKPLDV VVGADHRAKR TRFSCPYDGC VRNKMHKKFR ALKSLICVKN 120
HFKRSHCPKM FSCNRCNKKS FSVMADLKSH LKHCGESKWR CSCGTTFSRK DKLFGHMALF 180
EGHMPAVPDD ACPTTATTSG MDEDGESNQI SKDGNLQNGS IYLEAMRSSS HGVVQL*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
| Publications
? help Back to Top |
- Kobayashi Y, et al.
Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions.
Plant Physiol., 2013. 163(1): p. 180-92
[PMID:23839867] - Yokosho K,Yamaji N,Ma JF
Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench).
Plant Cell Physiol., 2014. 55(12): p. 2077-91
[PMID:25273892] - Geng X, et al.
LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis.
Plant J., 2017. 90(3): p. 491-504
[PMID:28181322] - Balzergue C, et al.
Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation.
Nat Commun, 2017. 8: p. 15300
[PMID:28504266] - Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A
Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation.
Front Plant Sci, 2017. 8: p. 822
[PMID:28567051] - Jiang F, et al.
Identification and characterization of suppressor mutants of stop1.
BMC Plant Biol., 2017. 17(1): p. 128
[PMID:28738784] - Daspute AA, et al.
Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms.
Front Plant Sci, 2017. 8: p. 1358
[PMID:28848571] - Sharma A,Wai CM,Ming R,Yu Q
Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis.
Genome Biol Evol, 2017. 9(9): p. 2170-2190
[PMID:28922793] - Zhang Y, et al.
The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis.
Front Plant Sci, 2018. 9: p. 118
[PMID:29491872]
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