PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.103760.2

Common Name

Csa_6G497260, LOC101205974

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 343aa MW: 38308.9 Da PI: 4.5616

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.103760.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.6	1.6e-11	172	215	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr ++Pk + K++ +iL +++Y+k+L Cucsa.103760.2 172 LMAERRRRKRLNDRLSMLRAIVPKiS------KMDRTSILGDTIDYVKEL 215 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.193	166	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.41E-15	169	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.0E-11	172	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.1E-9	172	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-14	173	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.09E-5	173	219	No hit	No description
CDD	cd04873	0.00303	267	308	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MELSQHGFLE ELLASTPWTS SYSNGFNDFF QNGWNFTSFD ENPQMASSTF SNFPTIQTPN 60 DFSFADQQLY SNFLEGFAMP ELDSSSYTKN NETPPFVSQE EMSNKNNGYP PVAMEEEELG 120 FIETETAPSV CKVEMEQMGV REINGSIMGV AELGKRSSNK AKKIEGQPSK NLMAERRRRK 180 RLNDRLSMLR AIVPKISKMD RTSILGDTID YVKELLERIN NLKEEEETGL DSNHVGFFNG 240 ISKEGKSNEV QVRNSPKFDV ERKEKETRID ICCATRPGLL LSTVNTLEAL GLEIQQCVIS 300 CFNDFSMQAS CAEQGSAQKA VASSDDIKEA LFRNAGYGGK CL*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MELSQHGFLE ELLASTPWTS SYSNGFNDFF QNGWNFTSFD ENPQMASSTF SNFPTIQTPN  60
DFSFADQQLY SNFLEGFAMP ELDSSSYTKN NETPPFVSQE EMSNKNNGYP PVAMEEEELG  120
FIETETAPSV CKVEMEQMGV REINGSIMGV AELGKRSSNK AKKIEGQPSK NLMAERRRRK  180
RLNDRLSMLR AIVPKISKMD RTSILGDTID YVKELLERIN NLKEEEETGL DSNHVGFFNG  240
ISKEGKSNEV QVRNSPKFDV ERKEKETRID ICCATRPGLL LSTVNTLEAL GLEIQQCVIS  300
CFNDFSMQAS CAEQGSAQKA VASSDDIKEA LFRNAGYGGK CL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	174	181	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011657932.1	0.0	PREDICTED: transcription factor bHLH93 isoform X1
Swissprot	Q9LSL1	3e-80	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A0A0KG39	0.0	A0A0A0KG39_CUCSA; Uncharacterized protein
STRING	XP_004167719.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	2e-82	beta HLH protein 93

Link Out ? help Back to Top
Phytozome	Cucsa.103760.2
Entrez Gene	101205974

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]