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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.103630.2 | ||||||||
Common Name | Csa_6G497120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 238aa MW: 27422.8 Da PI: 8.1925 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.9 | 4.2e-09 | 61 | 103 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +ErrRR++i++ f L l+P + K +Ka++L A++++k+Lq Cucsa.103630.2 61 AERRRREKIRQNFIALSALIPGL-----IKRDKASVLGGAIKFVKELQ 103 7*********************9.....69*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.985 | 53 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.2E-10 | 59 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.33E-13 | 60 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.1E-13 | 61 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.91E-9 | 61 | 107 | No hit | No description |
Pfam | PF00010 | 1.2E-6 | 61 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MEISSAKWLS ELEMMECSYE YERMKKYPHD YTLDELNFPA MEKVNNSRSS GQLISFGDYS 60 AERRRREKIR QNFIALSALI PGLIKRDKAS VLGGAIKFVK ELQERLKWAE EKEKEQKRVI 120 KSVVFVKTIN LDSDFDNETF SLDENGGRFS VRSVPTIETR VLEKDVLVRI HCKKHKGCYT 180 SIVSEIEKLK LTIVNSCVFP FGQSRLDITI IAEMEAGFCM TPMDLGKKLR ETLIEFI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 61 | 66 | ERRRRE |
2 | 62 | 67 | RRRREK |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 1e-133 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 1e-133 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004143535.1 | 1e-154 | PREDICTED: transcription factor bHLH25-like | ||||
Swissprot | Q9T072 | 7e-45 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | A0A0A0KLM8 | 1e-148 | A0A0A0KLM8_CUCSA; Uncharacterized protein | ||||
STRING | XP_004143535.1 | 1e-153 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 3e-47 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.103630.2 |
Publications ? help Back to Top | |||
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