PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.103620.1
Common NameCsa_6G497110, LOC101219728
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 312aa    MW: 33970.1 Da    PI: 5.7718
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.103620.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.36.8e-14133179455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h  +Er+RR+++ ++f  L  l+P +     kK++Ka+iL  A+ YIk+Lq
  Cucsa.103620.1 133 DHVLAERKRREKLSQRFVALSALIPDL-----KKMDKASILGDAITYIKDLQ 179
                     58899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.408129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-17133191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-11134179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-14134183No hitNo description
SuperFamilySSF474591.23E-16134190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-15135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508469.278239311IPR006121Heavy metal-associated domain, HMA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030001Biological Processmetal ion transport
GO:0046872Molecular Functionmetal ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MNDLEMNPFE CTLEELSSFQ TFSDESYTSH VDLDNSSVQT PAAPPPAKQA RTSSGSSRRI  60
SSMATSSSSS QIISFGNIEM SPMVAQPSYD NNNNNNKTSN YYCSPNKNHG VGIKRSAAAA  120
MNSNNRSPLV AQDHVLAERK RREKLSQRFV ALSALIPDLK KMDKASILGD AITYIKDLQE  180
RLKVANEQAA KATVESVVFV NKSDDASTII ASDDSSEENS SSSSDGAIPD VEARVSGKDV  240
LLRIHGKKCK GCLSNILNQI EKLNLTVLNS SALPFGNFRL DITIIAQMDD DFSMTVKELV  300
QKLRQASLEF M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-14133187870Transcription factor MYC2
5gnj_B1e-14133187870Transcription factor MYC2
5gnj_E1e-14133187870Transcription factor MYC2
5gnj_F1e-14133187870Transcription factor MYC2
5gnj_G1e-14133187870Transcription factor MYC2
5gnj_I1e-14133187870Transcription factor MYC2
5gnj_M1e-14133187870Transcription factor MYC2
5gnj_N1e-14133187870Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137142ERKRRE
2138143RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143425.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A0A0KG270.0A0A0A0KG27_CUCSA; Uncharacterized protein
STRINGXP_004143425.10.0(Cucumis sativus)
STRINGXP_004167813.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.15e-48bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]