PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.103610.1

Common Name

Csa_6G497100

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 276aa MW: 30851.8 Da PI: 8.1376

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.103610.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.4	9.2e-12	92	138	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L l+P + K +Ka+iL A++++k+Lq Cucsa.103610.1 92 EHVIAERKRREKLSQRFIALSALIPDL-----NKADKASILGGAIRHVKELQ 138 599*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.532	88	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.9E-9	92	138	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.2E-15	92	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.62E-12	93	142	No hit	No description
SuperFamily	SSF47459	3.79E-15	93	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.2E-14	94	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
DALQFDDLYD LPVLPYAVEE RPAKRVKVEE DVEAGGGGIN KCKTTFVGNN HKGDSSLSSS 60 QIISFENNWN YESVKNWNCT NGKRSCSMNG REHVIAERKR REKLSQRFIA LSALIPDLNK 120 ADKASILGGA IRHVKELQER LKVVEEQTTS KTSKPQSPVV CVKRTTLQPS SSDDDTSSSD 180 ENSFSGRLRS TPEIEVRFVN NDVLIRIHCH KRKGCLSYLL NKIQSFNNLT ILNTSALPFS 240 HSNLDITIVA QMDVGFHMTV EDVVKNLRQA LLDFN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	101	ERKRRE
2	97	102	RKRREK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	1e-178	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	1e-178	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008440466.1	1e-156	PREDICTED: transcription factor bHLH18-like
TrEMBL	A0A0A0KIM8	0.0	A0A0A0KIM8_CUCSA; Uncharacterized protein
STRING	XP_004143534.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24692	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22760.1	7e-45	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.103610.1

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]