PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

HD-ZIP

Protein Properties

Length: 265aa MW: 29259.3 Da PI: 8.2803

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.103500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.9	1.7e-18	115	169	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+ +++++ ++++ LA++l+L rqV vWFqNrRa+ k Cucsa.103500.1 115 RKKLRLTKEQSALLEESFKLHSTLNPKQKQALASELNLRPRQVEVWFQNRRARTK 169 788899***********************************************98 PP
2	HD-ZIP_I/II	125	3.5e-40	115	204	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq++lLEesF+ +++L+p++K++la+eL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke +eL+ +l Cucsa.103500.1 115 RKKLRLTKEQSALLEESFKLHSTLNPKQKQALASELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTDENRRLQKELQELK-AL 204 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-17	96	169	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.88E-18	106	172	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.346	111	171	IPR001356	Homeobox domain
SMART	SM00389	1.7E-15	113	175	IPR001356	Homeobox domain
Pfam	PF00046	6.4E-16	115	169	IPR001356	Homeobox domain
CDD	cd00086	7.21E-16	115	172	No hit	No description
PROSITE pattern	PS00027	0	146	169	IPR017970	Homeobox, conserved site
Pfam	PF02183	1.3E-10	171	205	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	2.9E-25	171	214	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009735	Biological Process	response to cytokinin
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MGFDDLSNTS LLLGLGLTLP SNPPHLISQK PKKPLDLLCF PPPESEPSLT LGLSTVDTYP 60 SETPDLSRQP SPHSAISSFS GSRVKRERDV SGEEIEEEKA SSRVSDEDED GSNARKKLRL 120 TKEQSALLEE SFKLHSTLNP KQKQALASEL NLRPRQVEVW FQNRRARTKL KQTEVDCEFL 180 KRCCETLTDE NRRLQKELQE LKALKLAQPL FMQMPAATLT MCPSCERIGG GAATVNGDGN 240 AKGPFSIATK PRFYKAFTKP SAAC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	171	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00477	DAP	Transfer from AT4G37790	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004143421.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	1e-100	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A0A0KJS8	0.0	A0A0A0KJS8_CUCSA; Homeobox-leucine zipper protein
STRING	XP_004170148.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1144	33	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	2e-83	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.103500.1
Entrez Gene	101218782

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]