 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cucsa.103470.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
| Family |
MYB |
| Protein Properties |
Length: 304aa MW: 33844.8 Da PI: 6.9041 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.103470.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 50.2 | 5.9e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
+g+W++eEd +l+ ++ q+G+g +W + ++++g++R++k+c++rw++yl
Cucsa.103470.1 14 KGPWSPEEDAKLKAYIDQFGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
79*********************************************97 PP
|
| 2 | Myb_DNA-binding | 37.8 | 4.4e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++
Cucsa.103470.1 69 GGFSEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
569******************.*********.***********97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 304 aa
Download sequence Send
to blast |
MGRAPCCDKA NVKKGPWSPE EDAKLKAYID QFGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60
YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120
QQQAVAARRI PPLKKDDFDK NFNNIIHPSS SLNLNNYEAP YIPNLSTSTQ DHQVRDLILK 180
MGGNPMENQN PLLFQSSNFG ELNMEFGASN DGIFHGSVDQ NSSGGGEFGD PIMLENFENG 240
LVEDFNNYGM MPSSSTSGES SYSLGEISSL GFNYSDFEAS QHQHHHHVIA PAFAHQSTHY 300
SLQ*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KT885085 | 0.0 | KT885085.1 Cucumis sativus cultivar TH169 1-aminocyclopropane-1-carboxylate synthase, hypothetical protein, DNA binding / transcription factor, and branched-chain amino acid aminotransferase genes, complete cds. |
| GenBank | KT885086 | 0.0 | KT885086.1 Cucumis sativus cultivar WDSGD 1-aminocyclopropane-1-carboxylate synthase, hypothetical protein, DNA binding / transcription factor, and branched-chain amino acid aminotransferase genes, complete cds. |
| GenBank | KT885087 | 0.0 | KT885087.1 Cucumis sativus cultivar WFEJ 1-aminocyclopropane-1-carboxylate synthase, hypothetical protein, DNA binding / transcription factor, and branched-chain amino acid aminotransferase genes, complete cds. |
| GenBank | KT885088 | 0.0 | KT885088.1 Cucumis sativus cultivar WJE F11 1-aminocyclopropane-1-carboxylate synthase, hypothetical protein, DNA binding / transcription factor, and branched-chain amino acid aminotransferase genes, complete cds. |
| GenBank | KT885089 | 0.0 | KT885089.1 Cucumis sativus cultivar TH118FLM 1-aminocyclopropane-1-carboxylate synthase, hypothetical protein, DNA binding / transcription factor, and branched-chain amino acid aminotransferase genes, complete cds. |
