PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 156aa MW: 18619.9 Da PI: 10.2895

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.103380.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	38.7	2.2e-12	32	77	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 ++ rr+++NRe+ArrsR+RK++ +e+L++ v +L+ eN++L ++l Cucsa.103380.1 32 RKRRRMESNRESARRSRLRKQKHLENLRNLVNKLKVENRELSNRLR 77 57899************************************96664 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.6E-9	25	76	No hit	No description
SMART	SM00338	1.3E-13	28	92	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.116	30	93	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.1E-9	32	77	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.25E-9	32	80	No hit	No description
CDD	cd14702	2.33E-13	33	77	No hit	No description
PROSITE pattern	PS00036	0	35	50	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MSSSSSENPD EPEAIDPGPF EPDRKVEVVD ERKRRRMESN RESARRSRLR KQKHLENLRN 60 LVNKLKVENR ELSNRLRFTV YEVNRVRTEN DHLQTEHTIL RRKLMCSRQV LIFRQYQREM 120 GYNAFEKPPT ISQSQSQSQY QYILNNNNNN LIINC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	31	35	RKRRR
2	31	52	RKRRRMESNRESARRSRLRKQK
3	44	50	RRSRLRK
4	44	51	RRSRLRKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022133118.1	2e-63	basic leucine zipper 9-like
TrEMBL	A0A0A0KJR4	1e-107	A0A0A0KJR4_CUCSA; Uncharacterized protein
STRING	XP_008440425.1	7e-87	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5435	32	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22850.2	3e-25	basic leucine-zipper 6

Link Out ? help Back to Top
Phytozome	Cucsa.103380.1

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]