PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.102560.1 | ||||||||
Common Name | Csa_6G491030, LOC101214481 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 174aa MW: 19054.2 Da PI: 7.6736 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.6 | 1.1e-16 | 22 | 70 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr r++lg++ ++ Aa+a++ a +l+g Cucsa.102560.1 22 YKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTAVFYLRG 70 9*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.812 | 21 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-20 | 21 | 79 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-29 | 21 | 79 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-37 | 21 | 84 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.08E-24 | 22 | 80 | No hit | No description |
Pfam | PF00847 | 1.4E-10 | 22 | 70 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-11 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-11 | 60 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MDGGGVPEAT RKRSALDNQR LYKGIRMRKW GKWVAEIREP NKRSRIWLGS YSSPVAAARA 60 YDTAVFYLRG PSARLNFPEL LAGEGRGITA GAGDMSAASI RKKATEVGAR VDALESSVGQ 120 QSRSHHSHAS ASPPETKGCS GFLDRVDLNK LPDPEEEDEE GDGEFEWERV ERH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-13 | 22 | 78 | 6 | 63 | ATERF1 |
3gcc_A | 1e-13 | 22 | 78 | 6 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00595 | DAP | Transfer from AT5G67190 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004141907.1 | 1e-124 | PREDICTED: ethylene-responsive transcription factor ERF011 | ||||
Swissprot | Q9FH94 | 1e-56 | ERF10_ARATH; Ethylene-responsive transcription factor ERF010 | ||||
TrEMBL | A0A0A0KIC8 | 1e-123 | A0A0A0KIC8_CUCSA; Uncharacterized protein | ||||
STRING | XP_004141907.1 | 1e-124 | (Cucumis sativus) | ||||
STRING | XP_004169980.1 | 1e-124 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1290 | 32 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67190.1 | 2e-55 | DREB and EAR motif protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.102560.1 |
Entrez Gene | 101214481 |
Publications ? help Back to Top | |||
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