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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.102400.1 | ||||||||
Common Name | Csa_6G490860, LOC101218067 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 194aa MW: 22029.4 Da PI: 8.9088 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56 | 9.9e-18 | 112 | 161 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++rg+W+AeIrdp+ r r++lg+f taeeAa+a+++a+ +++g Cucsa.102400.1 112 RFRGVR-ERRRGKWAAEIRDPR----RrIRVWLGTFQTAEEAARAYDRAAIEFRG 161 59***9.7779*********83....35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.5E-35 | 112 | 176 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-28 | 112 | 171 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.4E-19 | 112 | 171 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.657 | 112 | 170 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.1E-11 | 112 | 161 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-9 | 113 | 124 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.13E-23 | 123 | 172 | No hit | No description |
PRINTS | PR00367 | 5.8E-9 | 135 | 151 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MSGPSRDLVT APFGSRLGVE EENSIIVSAL TYVLTDTRIG LDHNDDYSNN HSGTAVLWFP 60 SANDECKKCQ FANCLGCNYF EDGNNQNQNV VKDEDNNDNG NKKKGRKKMK GRFRGVRERR 120 RGKWAAEIRD PRRRIRVWLG TFQTAEEAAR AYDRAAIEFR GGDRAKLNFP ASDYQQNEIP 180 QGNREPNLEE IKR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-16 | 113 | 170 | 6 | 63 | ATERF1 |
3gcc_A | 4e-16 | 113 | 170 | 6 | 63 | ATERF1 |
5wx9_A | 6e-16 | 111 | 170 | 13 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 105 | 111 | RKKMKGR |
2 | 105 | 120 | RKKMKGRFRGVRERRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 1e-157 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 1e-157 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004142007.1 | 1e-142 | PREDICTED: ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A0A0KJJ4 | 1e-141 | A0A0A0KJJ4_CUCSA; Uncharacterized protein | ||||
STRING | XP_004142007.1 | 1e-142 | (Cucumis sativus) | ||||
STRING | XP_004157207.1 | 1e-142 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF24431 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61890.1 | 3e-12 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.102400.1 |
Entrez Gene | 101218067 |
Publications ? help Back to Top | |||
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