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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.101370.1 | ||||||||
Common Name | Csa_6G486790, LOC101207587 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 339aa MW: 36350.7 Da PI: 5.9104 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67 | 3.6e-21 | 133 | 182 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae Aa+a+++a+++++g Cucsa.101370.1 133 KYRGVRQRP-WGKWAAEIRDPY----KaARVWLGTFDTAESAARAYDEAALRFRG 182 8********.**********76....35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.3E-33 | 132 | 191 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.528 | 133 | 190 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.37E-34 | 133 | 192 | No hit | No description |
SMART | SM00380 | 3.8E-37 | 133 | 196 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.8E-14 | 133 | 182 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-23 | 133 | 191 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.5E-12 | 134 | 145 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-12 | 156 | 172 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0009749 | Biological Process | response to glucose | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MADPEDNKAS EMFLNFSREM EMSAMVSALT HVVAGDTPDR DASYDSTWTS SSVSAPAETS 60 ALHGGGGYKR GRTLALENGG SVSAWSPSSV ISGNSSNVVI IRPQTGSATV ENSVYEYGGE 120 ITTMAEEPPA RRKYRGVRQR PWGKWAAEIR DPYKAARVWL GTFDTAESAA RAYDEAALRF 180 RGSKAKLNFP ENVRLRQLPT TESQTTHFTN SSPTNTLLAI PTHSEPIVSY RPTFNLQSSS 240 DASPANFLNF SDGQLPPPID MYSEIHFSSS SSMASSFYSS SAGLSNPQFS SSSSSSSPVV 300 SLSSPPLSFP GRRNSAGDNE HYSTAGWSEF FNHAASSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-23 | 132 | 193 | 4 | 66 | ATERF1 |
3gcc_A | 2e-23 | 132 | 193 | 4 | 66 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00584 | DAP | Transfer from AT5G64750 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004142046.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | A0A0A0KKX4 | 0.0 | A0A0A0KKX4_CUCSA; Uncharacterized protein | ||||
STRING | XP_004160502.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4933 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 9e-28 | ethylene response factor 110 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.101370.1 |
Entrez Gene | 101207587 |
Publications ? help Back to Top | |||
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