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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.100920.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NAC | ||||||||
Protein Properties | Length: 339aa MW: 38790.5 Da PI: 5.2545 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 148.9 | 2.5e-46 | 7 | 133 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 ppGfrFhPt elv++yLkkkv ++kl++ vi e+diyk+ PwdLp k ++k+++ ++yfF++r++kya+g r nrat+ gyWk+tg+d++v+ Cucsa.100920.5 7 PPGFRFHPTHVELVMFYLKKKVMQRKLPT-GVICELDIYKYAPWDLPaKsCLKGGDLKYYFFCPRERKYASGARMNRATEFGYWKSTGRDRTVHY 100 89***************************.99**************96347777888************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg ktL+f++g+apkg +tdWvmheyrl Cucsa.100920.5 101 -ENKEVGQIKTLTFFRGKAPKGAQTDWVMHEYRL 133 .8899***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-53 | 5 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.447 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.0E-23 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MWKRSPPPGF RFHPTHVELV MFYLKKKVMQ RKLPTGVICE LDIYKYAPWD LPAKSCLKGG 60 DLKYYFFCPR ERKYASGARM NRATEFGYWK STGRDRTVHY ENKEVGQIKT LTFFRGKAPK 120 GAQTDWVMHE YRLDDKNLSL EDAAQDAYVL CVIFQKDGPG PRNGAQYGAP FKEEDWEEDD 180 LEDLEINLED LGDSLNGDEN AYDTGHEVIY NSERTFSFNN KTMLCLDHRE YLEMNDLNVP 240 LSSTNQDRQM VNAAYSGSSL IEQPCFPYSS FGAAANQNVP SCQYPSLYHS NNQMCHPADL 300 DTLMHTSDSI QSALVQLFHN AFEEGFGFIN SKPFALMQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-43 | 7 | 156 | 16 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 1e-146 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 1e-146 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004148655.1 | 1e-135 | PREDICTED: NAC domain-containing protein 19 | ||||
Swissprot | Q9FY82 | 1e-78 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | A0A0A0KHR3 | 1e-134 | A0A0A0KHR3_CUCSA; Uncharacterized protein | ||||
STRING | XP_004165784.1 | 1e-135 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09330.4 | 3e-76 | NAC domain containing protein 82 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.100920.5 |
Publications ? help Back to Top | |||
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