PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

HD-ZIP

Protein Properties

Length: 293aa MW: 33430 Da PI: 4.3924

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.097950.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.8	2.2e-19	57	110	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe ++++ e++ +LAk lgL+ rqV +WFqNrRa++k Cucsa.097950.3 57 KKRRLTVDQVRFLEKSFETENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWK 110 56689************************************************9 PP
2	HD-ZIP_I/II	130.5	6.5e-42	56	146	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ +qv++LE+sFe+e+kLeperKv+la++Lglqprqva+WFqnrRAR+ktkqlEkdyeaL+++y +lk + e+L ke+++L++e+ Cucsa.097950.3 56 EKKRRLTVDQVRFLEKSFETENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEALQSSYGSLKVDYENLLKEKDSLKAEI 146 69**************************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.11E-19	42	114	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.265	52	112	IPR001356	Homeobox domain
SMART	SM00389	3.2E-19	55	116	IPR001356	Homeobox domain
CDD	cd00086	2.08E-18	57	113	No hit	No description
Pfam	PF00046	1.2E-16	57	110	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.4E-20	59	120	IPR009057	Homeodomain-like
PRINTS	PR00031	7.8E-6	83	92	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	87	110	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.8E-6	92	108	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.3E-14	112	153	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MPKLIFLTDC SGAGSRSMMS FEDIRGGNGS NRSFFCPLDS EDNGDEDLDD YFHHPEKKRR 60 LTVDQVRFLE KSFETENKLE PERKVQLAKD LGLQPRQVAI WFQNRRARWK TKQLEKDYEA 120 LQSSYGSLKV DYENLLKEKD SLKAEILLLT DKLLHKEKER GNSVLSEVDK FGEELPHNLV 180 ADSNLEDEVS KSSKLGCKQE DISSVKSDIF DSDSPHYTDG VHSSLLEPGD SSYIFDPDQS 240 DLSQDEEDNL GRNLLPPYIF PKLEDVDYSD PPTSSCNFVF PIEDNALWSW SL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	112	RRARWKTKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	0.0	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004152443.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X1
TrEMBL	A0A1S3AU52	0.0	A0A1S3AU52_CUCME; homeobox-leucine zipper protein HAT5-like isoform X1
STRING	XP_004152443.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	7e-47	homeobox 1

Link Out ? help Back to Top
Phytozome	Cucsa.097950.3
Entrez Gene	101215160

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]