PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

HD-ZIP

Protein Properties

Length: 340aa MW: 37943.7 Da PI: 4.4208

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.097950.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.5	2.7e-19	104	157	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe ++++ e++ +LAk lgL+ rqV +WFqNrRa++k Cucsa.097950.1 104 KKRRLTVDQVRFLEKSFETENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWK 157 56689************************************************9 PP
2	HD-ZIP_I/II	130.1	8.7e-42	103	193	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ +qv++LE+sFe+e+kLeperKv+la++Lglqprqva+WFqnrRAR+ktkqlEkdyeaL+++y +lk + e+L ke+++L++e+ Cucsa.097950.1 103 EKKRRLTVDQVRFLEKSFETENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEALQSSYGSLKVDYENLLKEKDSLKAEI 193 69**************************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.41E-19	89	161	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.265	99	159	IPR001356	Homeobox domain
SMART	SM00389	3.2E-19	102	163	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-16	104	157	IPR001356	Homeobox domain
CDD	cd00086	4.95E-18	104	160	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.5E-19	106	166	IPR009057	Homeodomain-like
PRINTS	PR00031	9.9E-6	130	139	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	134	157	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.9E-6	139	155	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.8E-14	159	200	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MAGRRVYGGD DGGSISGGSS NHSVLLQNRC GSFASEPLNA LFLSGSSSSS SPSLLDCSGA 60 GSRSMMSFED IRGGNGSNRS FFCPLDSEDN GDEDLDDYFH HPEKKRRLTV DQVRFLEKSF 120 ETENKLEPER KVQLAKDLGL QPRQVAIWFQ NRRARWKTKQ LEKDYEALQS SYGSLKVDYE 180 NLLKEKDSLK AEILLLTDKL LHKEKERGNS VLSEVDKFGE ELPHNLVADS NLEDEVSKSS 240 KLGCKQEDIS SVKSDIFDSD SPHYTDGVHS SLLEPGDSSY IFDPDQSDLS QDEEDNLGRN 300 LLPPYIFPKL EDVDYSDPPT SSCNFVFPIE DNALWSWSL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	151	159	RRARWKTKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	0.0	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004152443.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X1
TrEMBL	A0A1S3AU52	0.0	A0A1S3AU52_CUCME; homeobox-leucine zipper protein HAT5-like isoform X1
STRING	XP_004152443.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1500	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	2e-46	homeobox 1

Link Out ? help Back to Top
Phytozome	Cucsa.097950.1
Entrez Gene	101215160

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]