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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cucsa.097950.1 |
Common Name | Csa_1G045550, LOC101215160 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
HD-ZIP |
Protein Properties |
Length: 340aa MW: 37943.7 Da PI: 4.4208 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.097950.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 60.5 | 2.7e-19 | 104 | 157 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++t +q++ Le+ Fe ++++ e++ +LAk lgL+ rqV +WFqNrRa++k
Cucsa.097950.1 104 KKRRLTVDQVRFLEKSFETENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWK 157
56689************************************************9 PP
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2 | HD-ZIP_I/II | 130.1 | 8.7e-42 | 103 | 193 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
ekkrrl+ +qv++LE+sFe+e+kLeperKv+la++Lglqprqva+WFqnrRAR+ktkqlEkdyeaL+++y +lk + e+L ke+++L++e+
Cucsa.097950.1 103 EKKRRLTVDQVRFLEKSFETENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEALQSSYGSLKVDYENLLKEKDSLKAEI 193
69**************************************************************************************987 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 340 aa
Download sequence Send
to blast |
MAGRRVYGGD DGGSISGGSS NHSVLLQNRC GSFASEPLNA LFLSGSSSSS SPSLLDCSGA 60 GSRSMMSFED IRGGNGSNRS FFCPLDSEDN GDEDLDDYFH HPEKKRRLTV DQVRFLEKSF 120 ETENKLEPER KVQLAKDLGL QPRQVAIWFQ NRRARWKTKQ LEKDYEALQS SYGSLKVDYE 180 NLLKEKDSLK AEILLLTDKL LHKEKERGNS VLSEVDKFGE ELPHNLVADS NLEDEVSKSS 240 KLGCKQEDIS SVKSDIFDSD SPHYTDGVHS SLLEPGDSSY IFDPDQSDLS QDEEDNLGRN 300 LLPPYIFPKL EDVDYSDPPT SSCNFVFPIE DNALWSWSL*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 151 | 159 | RRARWKTKQ |