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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cucsa.097890.1 |
| Common Name | Csa_1G045480 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family |
WRKY |
| Protein Properties |
Length: 530aa MW: 57052.1 Da PI: 7.459 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.097890.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 94.9 | 5.5e-30 | 181 | 240 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
++Dg++WrKYGqK kg+++pr+YYrCt + +Cpv+k+v+r+a+d +++++tYeg+Hnh+
Cucsa.097890.1 181 MNDGCQWRKYGQKIAKGNPCPRAYYRCTGSpTCPVRKQVQRCADDMSILITTYEGNHNHP 240
58**************************888****************************7 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 530 aa
Download sequence Send
to blast |
MGEVREENQR LKQSLTQIMK DYEALKMQFL GIVGRDCKKV QDEDNDVNKE QQQQQHDDDQ 60
IELVSLSLGR FPVSEKKKIV DEKSCMNIIG GDHNEEAACK EALSLGLNCK FEREESMMAV 120
AKEVDSPNSF DHESTKEEAG ETNWPSKGGK TMRSVEDDVT PQNPPKRARV CVRARCETAT 180
MNDGCQWRKY GQKIAKGNPC PRAYYRCTGS PTCPVRKQVQ RCADDMSILI TTYEGNHNHP 240
LPASANAMAS TTSAAASMLL SGSTTSATAA SSSSTASNSL HGLNFYPNNS KPNFYLPNSN 300
SSIISSTSPT HPTITLDLTS NPSSSPSSSS THFGKFTSNF PNSRYPFTGQ LDFGSSRNNV 360
LSWNNGLLSY NRNNHPTTTI TTANNIYQNY IQQQQRNPTT SLQHQQPPLP DTIAAATKAI 420
TADPSFQSAL AAALTSIIGT GGASASAGLT KSSSGRGEQS LFQLMTTAAT TNKGNGCGTS 480
FLNNITTTTT TTSNSPPTGN MVFVPTNSLP FSNSKSASAS PGDHIDLTN*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}. |
| Publications
? help Back to Top |
- Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome.
PLoS ONE, 2009. 4(6): p. e5795
[PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
BMC Genomics, 2010. 11: p. 384
[PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
BMC Genomics, 2011. 12: p. 540
[PMID:22047402] - Tomato Genome Consortium
The tomato genome sequence provides insights into fleshy fruit evolution.
Nature, 2012. 485(7400): p. 635-41
[PMID:22660326] - Spyropoulou EA,Haring MA,Schuurink RC
RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
BMC Genomics, 2014. 15: p. 402
[PMID:24884371]
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