PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.097490.1
Common NameCsa_4G000890, LOC101217468
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 326aa    MW: 35910.5 Da    PI: 4.539
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.097490.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH331.1e-102472871055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  Cucsa.097490.1 247 RKRRERINERLRILQSLVPNG-----TKVDISTMLEEAVQYVKFLQ 287
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-14237303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.428237286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-12242296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-11243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.35E-11246291No hitNo description
PfamPF000105.6E-8247287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEGAISEREW ISLSGAYTAE ESDFMANLLS NYCIPNELNS DLSLEIPSSY WASSNEPSYY  60
SSDASDSSNI YALSQPNNNL PYTFNDSNPT LWLPNNGASL SLDFSIEDVR NADCLDDNGS  120
NIRKTRQCSR LQQSPADSVV NGKSSQPKRR ANDVMVEEAM RDDKVGPVEK TKRSGRARKT  180
SKIASGSCNE EDQIVSPNGQ CTSSFSSEDD CNEAQENNGG ITSSSTSNGK PRASRGSATD  240
PQSLYARKRR ERINERLRIL QSLVPNGTKV DISTMLEEAV QYVKFLQLQI KLLSSDDLWM  300
YAPIAYNGMD IGLNLKLMKQ DNASQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818740.0LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004152375.10.0PREDICTED: transcription factor bHLH84
TrEMBLA0A0A0KT100.0A0A0A0KT10_CUCSA; Uncharacterized protein
STRINGXP_004152375.10.0(Cucumis sativus)
STRINGXP_004172175.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.16e-42bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]