![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.095860.1 | ||||||||
Common Name | Csa_4G007070, LOC101205393 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 220aa MW: 24189.1 Da PI: 4.6958 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.5 | 8.2e-19 | 36 | 85 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +gr++AeIrdps+ + r++lg+f+tae+Aa a+++a+++++g Cucsa.095860.1 36 RFLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEDAALAYDRAARSMRG 85 678******.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.69E-30 | 35 | 92 | No hit | No description |
PROSITE profile | PS51032 | 20.534 | 36 | 93 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-34 | 36 | 99 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-11 | 37 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-8 | 37 | 48 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.49E-21 | 37 | 94 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-29 | 37 | 93 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-8 | 59 | 75 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 220 aa Download sequence Send to blast |
MDFKTSKTNS PSSSSSKPRK SKQQDGQQPL QQEPTRFLGV RRRPWGRYAA EIRDPSTKER 60 HWLGTFDTAE DAALAYDRAA RSMRGSKART NFVYSDMPHG SSVTSIISPD ESQLYPPTPT 120 QPNHLCFDPF TTSSFPGNDW LPDSDSYQPV TAFMDNGITN DDAELPPLPP DASSSYNDCA 180 AMVDWSTASS SSTSSFMGFN SNAVFPSFPD TSTSDGFGFX |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-20 | 37 | 92 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00163 | DAP | Transfer from AT1G28160 | Download |
![]() |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681874 | 0.0 | LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004152327.1 | 1e-159 | PREDICTED: ethylene-responsive transcription factor LEP | ||||
Swissprot | Q9FZ90 | 7e-44 | ERF87_ARATH; Ethylene-responsive transcription factor ERF087 | ||||
TrEMBL | A0A0A0KYM7 | 1e-158 | A0A0A0KYM7_CUCSA; Uncharacterized protein | ||||
STRING | XP_004165549.1 | 1e-131 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3904 | 31 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G13910.1 | 3e-33 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.095860.1 |
Entrez Gene | 101205393 |
Publications ? help Back to Top | |||
---|---|---|---|
|