PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.095770.1
Common NameCsa_4G007650
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 102aa    MW: 11205.6 Da    PI: 10.948
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.095770.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.71.2e-12758255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr +  +g+  + I+ p+++ k+k+ ++g+f+t+e+Aa a++a ++ ++g
  Cucsa.095770.1  7 RYRGVRKRG-WGKCTSAIYYPKQG-KQKQLWIGSFDTPEMAATAYDAVANFFHG 58
                    8*****999.***88887777543.58************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.70E-19668No hitNo description
SMARTSM003801.7E-20772IPR001471AP2/ERF domain
PROSITE profilePS5103218.373766IPR001471AP2/ERF domain
PfamPF008479.7E-8758IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-22767IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-17767IPR016177DNA-binding domain
PRINTSPR003671.1E-7819IPR001471AP2/ERF domain
PRINTSPR003671.1E-73248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MGDPLKRYRG VRKRGWGKCT SAIYYPKQGK QKQLWIGSFD TPEMAATAYD AVANFFHGPK  60
ARLNFPELRH TLPKFPPDAT VRKIRALARG AAEGSHGGGG GX
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004152323.13e-70PREDICTED: ethylene-responsive transcription factor ERF021-like
SwissprotQ9C9I21e-22ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A0A0KTL41e-68A0A0A0KTL4_CUCSA; Uncharacterized protein
STRINGXP_004157010.11e-69(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.16e-25ERF family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]